浙江农业学报

• 动物科学 • 上一篇    下一篇

鸭坦布苏病毒基因组全长cDNA克隆构建与分析

  

  1. (浙江省农业科学院 畜牧兽医研究所, 浙江 杭州 310021)
  • 出版日期:2015-11-25 发布日期:2015-12-05

Construction and analysis of full length cDNA of duck Tembusu Virus

  1. (Institute of Animal Husbandry and Veterinary Sciences, Zhejiang Academy of Agriculture Sciences, Hangzhou, Zhejiang 310021, China)
  • Online:2015-11-25 Published:2015-12-05

摘要: 根据鸭坦布苏病毒(Duck Tembusu virus, DTMUV) ZJ\|407株全基因组序列设计并合成4对特异的In\|fusion 引物,应用RT\|PCR技术分4段扩增了DTMUV全基因组cDNA。通过In\|fusion技术将扩增的cDNA重叠片段A,B,C 和 D片段分别克隆到载体pBluescriptⅡKS(+)中,获得了DTMUV全长基因组cDNA克隆pSK\|T7\|DTMUV。在扩增5′末端时,引入T7启动子序列;在基因组3′末段引入SmaⅠ酶切位点,以供cDNA模板的线性化之用。核酸序列分析表明,DTMUV毒株基因组全长为10 990个核苷酸,与DTMUV ZJ\|407 DF\|1细胞分离株的同源性为99.9%;全长基因组中有9个核苷酸发生突变,其中7处为沉默突变,2处导致相对应的氨基酸发生改变,且这两处均位于非结构蛋白NS5。结果表明,本研究成功构建了DTMUV ZJ\|407株基因组全长cDNA,为其感染性cDNA的拯救奠定基础。

关键词: 鸭坦布苏病毒, 全长cDNA克隆, 感染性克隆

Abstract: Four pairs of primers were designed based on the full length genomic sequence of DTMUV ZJ\|407 strain. Four overlapping cDNA fragments were amplified by RT\|PCR, which were designated as A, B, C and D, respectively. Individual fragments were assembled into pBluescript Ⅱ KS (+) (pSK) vector by In\|fusion technology, and formed the full\|length cDNA clone of DTMUV ZJ\|407 (pSK\|T7\|DTMUV). The complete DTMUV cDNA was positioned under the control of T7 promoter elements for in vitro transcription. A SmaⅠ site was introduced immediately down stream of 3′ end of DTMUV genome for in vitro linearization. Sequence analysis of the full\|length cDNA clone showed that there were nine nucleotide mutations compared with the parental virus sequence, of which seven nucleotide mutations were silent mutations and two nucleotide transitions resulted in amino acid substitutions in non\|structural protein (NS5). In conclusion,  The full\|length cDNA clone of DTMUV ZJ\|407 strain have been successfully constructed, and which would lay a solid foundation for further rescuing DTMUV effectively and further researching DTMUV at the molecular level.

Key words: duck Tembusu virus(DTMUV), full length cDNA clone, infectious cDNA clone