›› 2013, Vol. 25 ›› Issue (6): 0-1224.

• 动物科学 •    

MUC13基因参与的仔猪腹泻调控网络图谱构建

路伏增1,褚晓红1,戴丽荷1,陈绍孟1,傅春泉2,胡锦平1,徐如海1,*
  

  1. 1浙江省农业科学院 畜牧兽医研究所,浙江 杭州 310021;2金华职业技术学院,浙江 金华 321000
  • 收稿日期:1900-01-01 修回日期:1900-01-01 出版日期:2013-11-25 发布日期:2013-11-25

Construction of piglet diarrhea regulation network involved with MUC13 gene

LU Fu\|zeng;CHU Xiao\|hong;DAI Li\|he;CHEN Shao\|meng;FU Chun\|quan;HU Jin\|ping;XYU Ru\|hai;*   

  1. 1Institute of Animal Husbandry Sciences and Veterinary Medicine, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China;2Jinhua Vocational and Technical College,Jinghua 310000, China
  • Received:1900-01-01 Revised:1900-01-01 Online:2013-11-25 Published:2013-11-25

摘要: 为进一步阐述仔猪腹泻发生的分子机制,应用生物信息学方法构建了MUC13基因参与的仔猪腹泻调控网络图谱,并对其中的基因进行基因功能聚类分析。首先,选择物种为猪,通过STRING 数据库分析发现与MUC13相关联的有 10种蛋白(MUC4,MUC20,LRCH3,FLJ33471,ACK,ZDHHC19,CTPCT,APOD,Msp,CD71);其次,根据筛选到的蛋白,构建了仔猪腹泻调控网络,并从中找到了MUC13基因参与的仔猪腹泻调控网络,该网络包括MUC13,MUC4,MUC1,MUC2,MUC3,TFF3,NOD1,TNFSF10,FGFR1,CDH2等10个基因;最后,采用DAVID数据库对图谱中的这10个基因进行基因功能注释分析,发现富集相关程度较高的一些基因聚类条目有上皮生长因子(EGF)序列、SEA模块、跨膜结构域、胞质尾区等,因此推测MUC13基因结构的特异性决定了其在仔猪腹泻发展过程中具有特定的功能。文章建立的MUC13基因参与的仔猪腹泻调控网络具有一定的真实性,可以用来描述仔猪腹泻症发生发展过程中分子的相互作用。

关键词: MUC13, 仔猪腹泻, 调控网络

Abstract: This study developed a regulation network of piglets diarrhea in which MUC13 gene participated and made an assay of gene functional annotation clustering. Firstly, 10 MUC13\|associated proteins were generated through STRING 90 (MUC4, MUC20, LRCH3, FLJ33471, ACK, ZDHHC19, CTPCT, APOD, Msp, CD71). Secondly, using the 10 MUC13\|associated proteins, we developed a regulation network of piglets diarrhea in which MUC13 gene participated, which included MUC13, MUC4, MUC1, MUC2, MUC3, TFF3, NOD1, TNFSF10, FGFR1, CDH2 genes. Finally, with DAVID bioinformatics resources, we made an assay of gene functional annotation clustering, and found specific functional annotations terms included domain: SEA, extracellular region, transmembrane protein, so we speculated that the specific structure of the MUC13 determined MUC13 had a specific function in the development process of piglet diarrhea. The network constructed in this study has certain authenticity and can be used for describing molecular interactions in the occurrence and development of piglet diarrhea, which is important to elucidate the molecular mechanisms of diarrhea occurrence.

Key words: MUC13, piglet diarrhea, regulation network