›› 2014, Vol. 26 ›› Issue (3): 0-667674.

• 园艺科学 •    

濒危竹种小蓬竹(Drepanostachyum luodianense) RAPDPCR反应体系优化

刘济明,王敏,闫国华,赵小鹏,文萍,池馨,颜强,李鹏
  

  1. 贵州大学 林学院,贵州 贵阳 550025
  • 收稿日期:1900-01-01 修回日期:1900-01-01 出版日期:2014-05-25 发布日期:2014-05-25

Optimization of RAPDPCR conditions for a rare and endangered bamboo of Drepanostachyum luodianense

LIU Jiming;WANG Min;YAN Guohua;ZHAO Xiaopeng;WEN Ping;CHI Xin;YAN Qiang;LI Peng   

  1. College of Forestry, Guizhou University, Guiyang 550025, China
  • Received:1900-01-01 Revised:1900-01-01 Online:2014-05-25 Published:2014-05-25

摘要: 为了建立小蓬竹(Drepanostachyum luodianense) RAPDPCR反应的最优体系,以小蓬竹基因组DNA为模板,对影响其RAPD扩增的dNTPs浓度、模板DNA浓度、Taq DNA聚合酶量、引物浓度、Mg2+浓度等重要参数进行了单因子和正交试验。试验得出小蓬竹RAPD最优反应体系为: 20 μL反应体系,10×PCR buffer为1/10体积,dNTPs为100 μmol·L-1,模板DNA量为30 ng,Taq DNA聚合酶为10 U,引物浓度为02 μmol·L-1,Mg2+浓度为15 mmol·L-1。优化后的RAPDPCR反应程序为: 94℃预变性5 min,然后进入35个循环,即94℃变性1 min,35℃退火30 s,72℃延伸90 s,循环完毕后于72℃延伸7 min,最后在4℃保持。

关键词: 小蓬竹, RAPDPCR, 引物, dNTPs, Taq DNA聚合酶

Abstract: The Drepanostachyum luodianense RAPDPCR reaction system was optimized for the analysis of genetic variation and structure of D. luodianense. The genomic DNA of D. luodianense was extracted by improved CTAB method. Then, both single factor test and orthogonal design were applied to study the effects of main factors on the RAPDPCR system for D. luodianense, in which the main factors included the concentration of dNTPs, primers and Mg2+. The content of template DNA and Taq DNA polymerase and an optimal 20 μL RAPDPCR reaction system for D. luodianense was established, including 1/10 volume 10×PCR buffer, 100 μmol·L-1 dNTPs, 30 ng template DNA, 10 U Taq DNA polymerase, 02 μmol·L-1 primers and 150 mmol·L-1 Mg2+. The optimized reaction program was initially at 94℃ for 5 min, followed by 35 cycles at 94℃ for 1 min, at 35℃ for 30 s, at 72℃ for 90 s, and then held at 72℃ for 7 min, and finally kept at 4℃.

Key words: Drepanostachyum luodianense, RAPDPCR, primers, dNTPs, Taq DNA polymerase