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Abstract: Coding DNA sequences (CDS) of 208 proteins in Astacidea were analyzed in the present study. The content of G+C at three positions of codons, ENC (effective number of codon) of genes and frequency of synonym codon usage were calculated by the software CodonW 14, and the “optimal codons” were also determined. The results showed that the content of G+C at the third position of codons was significantly higher than that of the first and second positions, and genes preferred to the codons with C or G at the synonymous position. In addition, 9 codons were determined as the “optimal codons”, which were ended with G or C. The data would offer references in the research on new gene search, gene expression, forecast of protein function and structure, and comparative genome with other shrimps.
Key words: Astacidea, codon bias, optimal codon
LI Xilian, YANG Yuanjie, LI Qian, LIU Jindian,GU Zhimin* . Analysis on codon bias of functional gene of Astacidea[J]. .
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URL: http://www.zjnyxb.cn/EN/
http://www.zjnyxb.cn/EN/Y2014/V26/I4/862