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Analysis on codon bias of functional gene of Astacidea

  

  1. Zhejiang Institute of Freshwater Fisheries, Huzhou 313001, China
  • Online:2014-07-25 Published:2014-08-06

Abstract:  Coding DNA sequences (CDS) of 208 proteins in Astacidea were analyzed in the present study. The content of G+C at three positions of codons, ENC (effective number of codon) of genes and frequency of synonym codon usage were calculated by the software CodonW 14, and the “optimal codons” were also determined. The results showed that the content of G+C at the third position of codons was significantly higher than that of the first and second positions, and genes preferred to the codons with C or G at the synonymous position. In addition, 9 codons were determined as the “optimal codons”, which were ended with G or C. The data would offer references in the research on new gene search, gene expression, forecast of protein function and structure, and comparative genome with other shrimps.

Key words: Astacidea, codon bias, optimal codon