浙江农业学报

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实时荧光定量PCR法检测草莓镶脉病毒

  

  1. (1.浙江省农业科学院 园艺研究所,浙江 杭州 310021; 2.浙江师范大学 化学与生命科学学院,浙江 金华 321004; 3.舟山市定海区农业技术推广中心站,浙江 舟山 316000)
  • 出版日期:2016-06-25 发布日期:2016-06-12

Real time fluorescent quantitative PCR for detection of Strawberry vein banding virus

  1. (1. Institute of Horticulture, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China; 2. School of Chemical and Life Sciences, Zhejiang Normal University, Jinhua 321004, China; 3. Dinghai District Agricultural Technology Extension Center Station of Zhoushan City, Zhoushan 316000, China)
  • Online:2016-06-25 Published:2016-06-12

摘要: 为了建立一种特异、灵敏、快速检测草莓镶脉病毒(Strawberry vein banding virus,SVBV)的SYBR GreenⅠ实时荧光定量PCR方法,根据已有的检测SVBV的引物信息,合成引物,对不同草莓品种进行PCR扩增。经过克隆、测序及序列比对得到了感染SVBV的阳性植株,利用此植株PCR扩增产物构建重组质粒作为标准品,优化了PCR反应体系,标准曲线的循环阈值(Ct值)与模板浓度有良好的线性关系(R2=0.999 1);进行了灵敏度和重复性试验,敏感性可达到101拷贝·μL-1,约为普通PCR的1 000倍,重复性好;并与常规PCR方法进行了比较,成功建立了检测SVBV的实时荧光定量PCR法。用该方法检测了部分草莓品种的DNA样品,结果表明,大部分植株都带有SVBV。该方法具有很高的灵敏性和重复性,可用来快速检测草莓植株是否感染SVBV。

关键词: 草莓镶脉病毒, SYBR GreenⅠ, 实时荧光定量PCR

Abstract: To develop a highly sensitive and specific realtime quantitative PCR method with SYBR GreenⅠ to quantify Strawberry vein banding virus (SVBV), a pair of primers which were reported to screen strawberry SVBV samples of different cultivars was synthesized. Positive PCR products were cloned and sequenced by TA clone technology. The sequences were blasted with those in NCBI database and strawberry genome in GDR database. Results showed that the cloned sequences showed high levels of identity with Strawberry vein banding virus sequences. This fragment was cloned using pEASYT5 Zero vector to construct the recombinant plasmid which was used as a standard recombinant plasmid. The reaction system was optimized. The sensitivity and repeatability were evaluated. Leaves of strawberry plants were detected by the SYBR GreenⅠ real time fluorescent quantitative PCR assay in contrast to the routine PCR method. The results indicated that the realtime PCR assay with a quantitative standard curve of good linearity (R2 =0.999 1) was successfully established. The sensitivity of detection limit could reach 101 copies·μL-1, and it was about 1 000 times of the routine PCR. The realtime PCR assay was evaluated with some strawberry samples collected from field. This method had high sensitivity and stability, and could be used in SVBV infection diagnosis and investigation.

Key words: Strawberry vein banding virus;SYBR Green Ⅰ, realtime fluorescent quantitative PCR