Acta Agriculturae Zhejiangensis ›› 2022, Vol. 34 ›› Issue (11): 2416-2427.DOI: 10.3969/j.issn.1004-1524.2022.11.11
• Horticultural Science • Previous Articles Next Articles
WANG Baogen1(), DONG Junyang2, WANG Ying1, LI Sujuan3, WANG Jian1, LU Zhongfu1, WU Xiaohua1, LI Guojing1, WU Xinyi1,3,*(
)
Received:
2022-03-07
Online:
2022-11-25
Published:
2022-11-29
Contact:
WU Xinyi
CLC Number:
WANG Baogen, DONG Junyang, WANG Ying, LI Sujuan, WANG Jian, LU Zhongfu, WU Xiaohua, LI Guojing, WU Xinyi. Evaluation and genetic diversity analysis of common bean germplasm in Zhejiang Province, China[J]. Acta Agriculturae Zhejiangensis, 2022, 34(11): 2416-2427.
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URL: http://www.zjnyxb.cn/EN/10.3969/j.issn.1004-1524.2022.11.11
编号 Code | 种质名称 Germplasm name | 收集地点 Collecting locations |
---|---|---|
CB01 | 王阜四季豆Wangfu common bean | 淳安县Chunan County |
CB02 | 梅豆Plum bean | 建德市Jiande |
CB03 | 四季豆 Common bean | 建德市Jiande |
CB04 | 花籽扁梅豆Huazibian plum bean | 浦江县Pujiang County |
CB05 | 土京豆Tujing bean | 永康市Yongkang |
CB06 | 土京豆Tujing bean | 永康市Yongkang |
CB07 | 仙居矮脚金豆 | 仙居县Xianju County |
Xianjuaijiaojing bean | ||
CB08 | 花梅豆Huamei baen | 建德市Jiande |
CB09 | 四季豆Common bean | 庆元县Qingyuan County |
CB10 | 四季豆Common bean | 景宁县Jingning County |
CB11 | 四季豆Common bean | 庆元县Qingyuan County |
CB12 | 四季豆Common bean | 庆元县Qingyuan County |
CB13 | 四季豆Common bean | 庆元县Qingyuan County |
CB14 | 四季豆Common bean | 开化县Kaihua County |
CB15 | 四季豆Common bean | 开化县Kaihua County |
CB16 | 四季豆Common bean | 衢州市Quzhou |
CB17 | 四季豆Common bean | 衢州市Quzhou |
CB18 | 兰溪白花白荚 | 兰溪市Lanxi |
Lanxi Baihuabaijia bean | ||
CB19 | 三都春分豆Sanduchunfen bean | 松阳县Songyang County |
CB20 | 矮脚四季豆Aijiao common bean | 仙居县Xianju County |
CB21 | 红毛四季豆 | 杭州市Hangzhou |
Hongmao common bean | ||
CB22 | 四季豆Common bean | 景宁县Jingning County |
CB23 | 四季豆Common bean | 桐乡市Tongxiang |
CB24 | 四季豆Common bean | 衢州市Quzhou |
CB25 | 四季豆Common bean | 诸暨市Zhuji |
CB26 | 扁荚Bianjia bean | 杭州市Hangzhou |
CB27 | 四季豆Common bean | 开化县Kaihua County |
CB28 | 四季豆Common bean | 杭州市Hangzhou |
CB53 | 白银豆Baiying bean | 瑞安市Ruian |
CB54 | 白籽梅豆Baizi plum bean | 宁波市 Ningbo |
CB58 | 高温四季豆Gaowen common bean | 杭州市Hangzhou |
CB59 | 杭州白花四季豆 | 杭州市Hangzhou |
Hangzhou Baihua common bean | ||
CB60 | 黑珍珠Heizhenzhu bean | 湖州市Huzhou |
CB61 | 红花白荚Honghuabaijia bean | 泰顺县Taishun County |
CB62 | 红花青荚Honghuaqingjia bean | 丽水市Lishui |
CB63 | 红花四季豆Honghua common bean | 杭州市Hangzhou |
CB64 | 红筋园荚金豆 | 仙居县Xianju County |
Hongjingyuanjiajin bean | ||
编号 Code | 种质名称 Germplasm name | 收集地点 Collecting locations |
CB65 | 花籽红花青荚 | 绍兴市Shaoxing |
Hongzihonghuaqingjia bean | ||
CB70 | 临安四季豆Linan common bean | 杭州市Hangzhou |
CB73 | 满棚红Manshanhong bean | 淳安县Chunan County |
CB74 | 磐安四季豆Panan common bean | 磐安县Panan County |
CB78 | 五漱四季豆Wushu common bean | 永嘉县Yongjia County |
CB79 | 五漱四季豆Wushu common bean | 永嘉县Yongjia County |
CB80 | 筱村四季豆Xiaocun common bean | 泰顺县Taishun County |
Table 1 Information of 44 common bean germplasms collected from Zhejiang province
编号 Code | 种质名称 Germplasm name | 收集地点 Collecting locations |
---|---|---|
CB01 | 王阜四季豆Wangfu common bean | 淳安县Chunan County |
CB02 | 梅豆Plum bean | 建德市Jiande |
CB03 | 四季豆 Common bean | 建德市Jiande |
CB04 | 花籽扁梅豆Huazibian plum bean | 浦江县Pujiang County |
CB05 | 土京豆Tujing bean | 永康市Yongkang |
CB06 | 土京豆Tujing bean | 永康市Yongkang |
CB07 | 仙居矮脚金豆 | 仙居县Xianju County |
Xianjuaijiaojing bean | ||
CB08 | 花梅豆Huamei baen | 建德市Jiande |
CB09 | 四季豆Common bean | 庆元县Qingyuan County |
CB10 | 四季豆Common bean | 景宁县Jingning County |
CB11 | 四季豆Common bean | 庆元县Qingyuan County |
CB12 | 四季豆Common bean | 庆元县Qingyuan County |
CB13 | 四季豆Common bean | 庆元县Qingyuan County |
CB14 | 四季豆Common bean | 开化县Kaihua County |
CB15 | 四季豆Common bean | 开化县Kaihua County |
CB16 | 四季豆Common bean | 衢州市Quzhou |
CB17 | 四季豆Common bean | 衢州市Quzhou |
CB18 | 兰溪白花白荚 | 兰溪市Lanxi |
Lanxi Baihuabaijia bean | ||
CB19 | 三都春分豆Sanduchunfen bean | 松阳县Songyang County |
CB20 | 矮脚四季豆Aijiao common bean | 仙居县Xianju County |
CB21 | 红毛四季豆 | 杭州市Hangzhou |
Hongmao common bean | ||
CB22 | 四季豆Common bean | 景宁县Jingning County |
CB23 | 四季豆Common bean | 桐乡市Tongxiang |
CB24 | 四季豆Common bean | 衢州市Quzhou |
CB25 | 四季豆Common bean | 诸暨市Zhuji |
CB26 | 扁荚Bianjia bean | 杭州市Hangzhou |
CB27 | 四季豆Common bean | 开化县Kaihua County |
CB28 | 四季豆Common bean | 杭州市Hangzhou |
CB53 | 白银豆Baiying bean | 瑞安市Ruian |
CB54 | 白籽梅豆Baizi plum bean | 宁波市 Ningbo |
CB58 | 高温四季豆Gaowen common bean | 杭州市Hangzhou |
CB59 | 杭州白花四季豆 | 杭州市Hangzhou |
Hangzhou Baihua common bean | ||
CB60 | 黑珍珠Heizhenzhu bean | 湖州市Huzhou |
CB61 | 红花白荚Honghuabaijia bean | 泰顺县Taishun County |
CB62 | 红花青荚Honghuaqingjia bean | 丽水市Lishui |
CB63 | 红花四季豆Honghua common bean | 杭州市Hangzhou |
CB64 | 红筋园荚金豆 | 仙居县Xianju County |
Hongjingyuanjiajin bean | ||
编号 Code | 种质名称 Germplasm name | 收集地点 Collecting locations |
CB65 | 花籽红花青荚 | 绍兴市Shaoxing |
Hongzihonghuaqingjia bean | ||
CB70 | 临安四季豆Linan common bean | 杭州市Hangzhou |
CB73 | 满棚红Manshanhong bean | 淳安县Chunan County |
CB74 | 磐安四季豆Panan common bean | 磐安县Panan County |
CB78 | 五漱四季豆Wushu common bean | 永嘉县Yongjia County |
CB79 | 五漱四季豆Wushu common bean | 永嘉县Yongjia County |
CB80 | 筱村四季豆Xiaocun common bean | 泰顺县Taishun County |
性状 Traits | 最小值 Minimum | 中位数 Median | 最大值 Maximum | 平均值±标准误 | 变异系数 Coefficient of variation |
---|---|---|---|---|---|
始花节位 First flower node | 2.30 | 3.70 | 7.20 | 3.9±0.17 | 0.28 |
荚长 Pod length/cm | 11.80 | 15.70 | 21.30 | 16.01±0.36 | 0.15 |
荚宽 Pod length/cm | 0.74 | 1.09 | 1.73 | 1.06±0.03 | 0.18 |
单荚重 Single pod weight/g | 6.00 | 10.90 | 16.60 | 10.97±0.37 | 0.22 |
千粒重 Thousang seed weight/g | 144.56 | 260.23 | 528.00 | 271.59±10.41 | 0.25 |
Table 2 Performances of five agronomic traits in the 44 accessions
性状 Traits | 最小值 Minimum | 中位数 Median | 最大值 Maximum | 平均值±标准误 | 变异系数 Coefficient of variation |
---|---|---|---|---|---|
始花节位 First flower node | 2.30 | 3.70 | 7.20 | 3.9±0.17 | 0.28 |
荚长 Pod length/cm | 11.80 | 15.70 | 21.30 | 16.01±0.36 | 0.15 |
荚宽 Pod length/cm | 0.74 | 1.09 | 1.73 | 1.06±0.03 | 0.18 |
单荚重 Single pod weight/g | 6.00 | 10.90 | 16.60 | 10.97±0.37 | 0.22 |
千粒重 Thousang seed weight/g | 144.56 | 260.23 | 528.00 | 271.59±10.41 | 0.25 |
Fig.4 Amplification signals for the KASP markers in 44 accessions A, Single genotype; B, Two genotypes. Blue signal represented HEX allelic variation, red signal represented FAM allelic variation.
ID | 染色体 Chromosome | 基因组位置 SNP position in chromosome v1.0 | FAM引物 Primer_AlleleFAM | HEX引物 Primer_AlleleHEX | 通用引物 Universal primer | FAM等 位变异 Allele_ FAM | HEX等 位变异 Allele_ HEX |
---|---|---|---|---|---|---|---|
715645089 | Chr01 | 3044239 | GAAGGTGACCAAGTTCATGCTTTAAGATTCATGTGCATG | GAAGGTCGGAGTCAACGGATTTTAAGATTCATGTGCATT | GTTTGGTTCCTCTGAATTTATATTTATTTT | G | T |
715643138 | Chr01 | 24744217 | GAAGGTGACCAAGTTCATGCTGCAGTACTCACAACATCAATC | GAAGGTCGGAGTCAACGGATTGCAGTACTCACAACATCAATA | TCTCTAGAAGAGCTTGCAAGGACTATTATG | C | A |
715640479 | Chr01 | 35496757 | GAAGGTGACCAAGTTCATGCTGTCATAGAATATGCCGATG | GAAGGTCGGAGTCAACGGATTGTCATAGAATATGCCGATT | TATTCTAAAAGTATGTCTTGCA | G | T |
715639381 | Chr01 | 37227412 | GAAGGTGACCAAGTTCATGCTCAGGTTAGGGTTAGGGTTTGCTTT | GAAGGTCGGAGTCAACGGATTCAGGTTAGGGTTAGGGTTTGCTTC | GTCTCCGCGGACTTTCCGGGATC | T | C |
715648889 | Chr01 | 43699409 | GAAGGTGACCAAGTTCATGCTCTCAGTGTTCGTCATGTGCCATGTA | GAAGGTCGGAGTCAACGGATTCTCAGTGTTCGTCATGTGCCATGTG | ATGGGACTGAGCAGAAACCTTA | A | G |
715645921 | Chr01 | 48941111 | GAAGGTGACCAAGTTCATGCTCACCAATAGTTTCAAACTACTAT | GAAGGTCGGAGTCAACGGATTCACCAATAGTTTCAAACTACTAC | TGATAACGTGATGTGATCTAGGTAAC | T | C |
715649479 | Chr02 | 6743 | GAAGGTGACCAAGTTCATGCTGGTTTAACTGGGGTGTCTAGA | GAAGGTCGGAGTCAACGGATTGGTTTAACTGGGGTGTCTAGG | TGTCAATCTCCAATCCACCAAG | A | G |
715640819 | Chr02 | 5855171 | GAAGGTGACCAAGTTCATGCTGGTGGCGAATGAATTCAAATTGC | GAAGGTCGGAGTCAACGGATTGGTGGCGAATGAATTCAAATTGT | AAAGCTATACATGCCACTAAAGTTTTG | C | T |
715647790 | Chr02 | 8927833 | GAAGGTGACCAAGTTCATGCTGGTTCATGCTTTAGGCTTAG | GAAGGTCGGAGTCAACGGATTGGTTCATGCTTTAGGCTTAA | ACCACTAGTAAAATTCAATTTCAGTTTCTT | G | A |
715642024 | Chr02 | 12142956 | GAAGGTGACCAAGTTCATGCTGGCTTCGTTTGCATGAATGA | GAAGGTCGGAGTCAACGGATTGGCTTCGTTTGCATGAATGG | CACCTTAGGACCAAGTAAACACAAACACAA | A | G |
715641350 | Chr02 | 21494397 | GAAGGTGACCAAGTTCATGCTGACTTGGACATTATTCTTATGGATG | GAAGGTCGGAGTCAACGGATTGACTTGGACATTATTCTTATGGATA | ATGTTAACTTTTTAAAAAAAAACCTC | G | A |
715648528 | Chr02 | 24042084 | GAAGGTGACCAAGTTCATGCTAACTAAAGGGCCTCGACCCC | GAAGGTCGGAGTCAACGGATTAACTAAAGGGCCTCGACCCT | GTTTTCATGGCACCGAGGCGAATACGAAGA | C | T |
715647099 | Chr02 | 32859750 | GAAGGTGACCAAGTTCATGCTGGTAAGTTTGGTGCTATTGCTT | GAAGGTCGGAGTCAACGGATTGGTAAGTTTGGTGCTATTGCTC | TAACCTTTTTCCTCACGTTTCTT | T | C |
715646488 | Chr02 | 36676613 | GAAGGTGACCAAGTTCATGCTCCATCCTTAAGAACTTGTGCAT | GAAGGTCGGAGTCAACGGATTCCATCCTTAAGAACTTGTGCAC | ACACCTTCAATGCTGTGGTAACA | T | C |
715647680 | Chr02 | 43900872 | GAAGGTGACCAAGTTCATGCTCAAGCTCTGTCATGCTCATGC | GAAGGTCGGAGTCAACGGATTCAAGCTCTGTCATGCTCATGT | ATAGTCTAGACCACATCACACG | C | T |
715648447 | Chr02 | 48531519 | GAAGGTGACCAAGTTCATGCTGGTTGTCAAAGGTTTAAAGCTG | GAAGGTCGGAGTCAACGGATTGGTTGTCAAAGGTTTAAAGCTA | GATTCTTCAGTAAGAGTAACCATG | G | A |
ID | 染色体 Chromosome | 基因组位置 SNP position in chromosome v1.0 | FAM引物 Primer_AlleleFAM | HEX引物 Primer_AlleleHEX | 通用引物 Universal primer | FAM等 位变异 Allele_ FAM | HEX等 位变异 Allele_ HEX |
715644947 | Chr03 | 6366468 | GAAGGTGACCAAGTTCATGCTCCGTGTCACTGAGATCACTATC | GAAGGTCGGAGTCAACGGATTCCGTGTCACTGAGATCACTATT | AATACGAGGATGAATACATTTC | C | T |
715647580 | Chr03 | 12483803 | GAAGGTGACCAAGTTCATGCTAAAAACCTATCAAAGTAG | GAAGGTCGGAGTCAACGGATTAAAAACCTATCAAAGTAA | CTTTGTTCTTTGTTTCTCACAT | G | A |
715642031 | Chr03 | 15073563 | GAAGGTGACCAAGTTCATGCTTAGTTTTCATATTCAACC | GAAGGTCGGAGTCAACGGATTTAGTTTTCATATTCAACT | ATGAGAAATCAACTGGATCAAA | C | T |
715643408 | Chr03 | 27104732 | GAAGGTGACCAAGTTCATGCTGTCAGACAAACTCATTTACCCCG | GAAGGTCGGAGTCAACGGATTGTCAGACAAACTCATTTACCCCA | ATAAATCATTCCACCATCTAGA | G | A |
715649919 | Chr03 | 30251280 | GAAGGTGACCAAGTTCATGCTGCATTAATAGAGGATAGATGAAAC | GAAGGTCGGAGTCAACGGATTGCATTAATAGAGGATAGATGAAAT | GTTGTCTCATTGATAACCCTCA | C | T |
715650183 | Chr03 | 39786455 | GAAGGTGACCAAGTTCATGCTGTTTGCCCTTCTATTGGTATA | GAAGGTCGGAGTCAACGGATTGTTTGCCCTTCTATTGGTATC | TCTCCAACAAGCAAGAGCACTA | A | C |
715649769 | Chr04 | 3592 | GAAGGTGACCAAGTTCATGCTGTGCAAACCTGCAACTCAAAATTGC | GAAGGTCGGAGTCAACGGATTGTGCAAACCTGCAACTCAAAATTGA | ATCAGAACTGGAAGGATATCTT | C | A |
715647290 | Chr04 | 3109241 | GAAGGTGACCAAGTTCATGCTCCCTCTCTACCTAAGAACATGA | GAAGGTCGGAGTCAACGGATTCCCTCTCTACCTAAGAACATGC | GTTTTATGGTTAAGTGGTTAGTTTTGTAAG | A | C |
715641595 | Chr04 | 6493282 | GAAGGTGACCAAGTTCATGCTCGATATATCACCCATTAAC | GAAGGTCGGAGTCAACGGATTCGATATATCACCCATTAAA | ACCTTATAGTGTTTTGTTATCA | C | A |
715642949 | Chr04 | 15465426 | GAAGGTGACCAAGTTCATGCTGACTTCCTTATGCAGATCAACAT | GAAGGTCGGAGTCAACGGATTGACTTCCTTATGCAGATCAACAC | GAGTTTGATGAAGTACTTCATAAC | T | C |
715650920 | Chr04 | 21774557 | GAAGGTGACCAAGTTCATGCTTCCCACACACACTCACATCCAACAC | GAAGGTCGGAGTCAACGGATTTCCCACACACACTCACATCCAACAT | TGCTTAAAAGGACCACCTCGCTTA | C | T |
715650671 | Chr04 | 25684069 | GAAGGTGACCAAGTTCATGCTTGTTAGAACGCTGGTGCAT | GAAGGTCGGAGTCAACGGATTTGTTAGAACGCTGGTGCAG | GAAAAGTAAAATCTGCATCACC | T | G |
715642248 | Chr04 | 34571194 | GAAGGTGACCAAGTTCATGCTTCCCTTAACTTACTTGTGG | GAAGGTCGGAGTCAACGGATTTCCCTTAACTTACTTGTGA | CTTTTCAGGCTTGCTTTGCAGAC | G | A |
715639507 | Chr04 | 37382175 | GAAGGTGACCAAGTTCATGCTGTCACGGTGAATATTACCCG | GAAGGTCGGAGTCAACGGATTGTCACGGTGAATATTACCCA | AGAAGGTCAGATAGATAGGTCC | G | A |
715646125 | Chr04 | 43085220 | GAAGGTGACCAAGTTCATGCTCCTAATAAGCTTAAGTCAATACCTG | GAAGGTCGGAGTCAACGGATTCCTAATAAGCTTAAGTCAATACCTT | AAAACTGAAAAGTGAAATGCTC | G | T |
715639543 | Chr05 | 6447545 | GAAGGTGACCAAGTTCATGCTGTCGATTGAAGGCTTTATCTCAT | GAAGGTCGGAGTCAACGGATTGTCGATTGAAGGCTTTATCTCAC | ACATTGAAATCAAACTCACACACTAA | T | C |
715644469 | Chr05 | 9344921 | GAAGGTGACCAAGTTCATGCTGAGTGTGCCCTAAAACAAAATATC | GAAGGTCGGAGTCAACGGATTGAGTGTGCCCTAAAACAAAATATA | CTTGTAGCAGTTTTCTATCACGAGAGTATC | C | A |
715645339 | Chr05 | 39192763 | GAAGGTGACCAAGTTCATGCTGCTGAGCTAAGACTATGAATCGGGC | GAAGGTCGGAGTCAACGGATTGCTGAGCTAAGACTATGAATCGGGT | TCCTTGTTAAATGTGCTCATTC | C | T |
715646737 | Chr05 | 40469914 | GAAGGTGACCAAGTTCATGCTACACACCCTTCTTTCTCTCCTCTCG | GAAGGTCGGAGTCAACGGATTACACACCCTTCTTTCTCTCCTCTCT | AGGACAACCACTCATTTTTGCTC | G | T |
715650987 | Chr06 | 15998 | GAAGGTGACCAAGTTCATGCTCCAAAGGAGTCCACATTCA | GAAGGTCGGAGTCAACGGATTCCAAAGGAGTCCACATTCC | GGCCTACTAGTTTTACAAGAATGTTC | A | C |
715647844 | Chr06 | 6504361 | GAAGGTGACCAAGTTCATGCTCTCTTCTAATTCAGGACCAAATC | GAAGGTCGGAGTCAACGGATTCTCTTCTAATTCAGGACCAAATT | CGAGGTAGGCAAGCCTTCCCTT | C | T |
715640066 | Chr06 | 9341450 | GAAGGTGACCAAGTTCATGCTGGGGCCAACCTCAAATTTA | GAAGGTCGGAGTCAACGGATTGGGGCCAACCTCAAATTTG | GTGTCCCCTTAATCATTTCACATTGTTC | A | G |
715645954 | Chr06 | 15786595 | GAAGGTGACCAAGTTCATGCTGACCTTCTGAAGGAACTGA | GAAGGTCGGAGTCAACGGATTGACCTTCTGAAGGAACTGG | ATGCAGGTAAAACCAGTGGTCCAGAC | A | G |
715650222 | Chr06 | 18501260 | GAAGGTGACCAAGTTCATGCTGTCACAATGAGGCCTTCTCTC | GAAGGTCGGAGTCAACGGATTGTCACAATGAGGCCTTCTCTT | ATCAGTATGATTCTACATGTTTTTGG | C | T |
715646818 | Chr06 | 21496816 | GAAGGTGACCAAGTTCATGCTAAATTACACTAGCATAAT | GAAGGTCGGAGTCAACGGATTAAATTACACTAGCATAAC | GAGCCATTTGTGTTTGAATATG | T | C |
715645677 | Chr06 | 27370471 | GAAGGTGACCAAGTTCATGCTGAATAAAGAGTGATGATA | GAAGGTCGGAGTCAACGGATTGAATAAAGAGTGATGATG | ACATGGCCATGTATTCCGTCTTGGTTTGGT | A | G |
715639203 | Chr06 | 30199530 | GAAGGTGACCAAGTTCATGCTGACATGTTCTTGCATTATGA | GAAGGTCGGAGTCAACGGATTGACATGTTCTTGCATTATGG | TGGTACCTTTGATGTATCACACT | A | G |
715639367 | Chr06 | 31688381 | GAAGGTGACCAAGTTCATGCTTCCTCTTCCTGCACCATAGTC | GAAGGTCGGAGTCAACGGATTTCCTCTTCCTGCACCATAGTT | CATGTGAGCAAGTGTTTGGTGGCATTGAAC | C | T |
ID | 染色体 Chromosome | 基因组位置 SNP position in chromosome v1.0 | FAM引物 Primer_AlleleFAM | HEX引物 Primer_AlleleHEX | 通用引物 Universal primer | FAM等 位变异 Allele_ FAM | HEX等 位变异 Allele_ HEX |
715648393 | Chr07 | 61520 | GAAGGTGACCAAGTTCATGCTGTTGTCTTTCAATGAACGAT | GAAGGTCGGAGTCAACGGATTGTTGTCTTTCAATGAACGAC | AAGGCAGGAATCTTTAAAAGCT | T | C |
715645699 | Chr07 | 1153000 | GAAGGTGACCAAGTTCATGCTTGAGTTCACGTGCATTGGGCATG | GAAGGTCGGAGTCAACGGATTTGAGTTCACGTGCATTGGGCATT | CCAAACAACATAAAGCAATTTCTAACAAAC | G | T |
715648625 | Chr07 | 9516304 | GAAGGTGACCAAGTTCATGCTGCATGTAGTGTTTTTAGTTTC | GAAGGTCGGAGTCAACGGATTGCATGTAGTGTTTTTAGTTTT | CCATATCACTAGGACTCTGAAC | C | T |
715648880 | Chr07 | 12261154 | GAAGGTGACCAAGTTCATGCTGACATCATCTTTGCAGTGAAC | GAAGGTCGGAGTCAACGGATTGACATCATCTTTGCAGTGAAT | TAATGGTCTTGATAAGGAGAGC | C | T |
715650406 | Chr07 | 15316545 | GAAGGTGACCAAGTTCATGCTTGACATAAATTGTGAAAG | GAAGGTCGGAGTCAACGGATTTGACATAAATTGTGAAAA | AAAGAATGTGAAAGAAGTCCAC | G | A |
715642111 | Chr07 | 18479982 | GAAGGTGACCAAGTTCATGCTCCGTAAGCTGGGACTTAACAGAAAT | GAAGGTCGGAGTCAACGGATTCCGTAAGCTGGGACTTAACAGAAAG | CCTACATTTAGGGTCCTTGTGTTTTT | T | G |
715643102 | Chr07 | 24160043 | GAAGGTGACCAAGTTCATGCTAGCAAGGGCGGATCAAAGGA | GAAGGTCGGAGTCAACGGATTAGCAAGGGCGGATCAAAGGC | CCTCCCCTTGAGAATCCTCCTG | A | C |
715640138 | Chr07 | 30148305 | GAAGGTGACCAAGTTCATGCTCTGTTTGCTTCTGTTTACTGC | GAAGGTCGGAGTCAACGGATTCTGTTTGCTTCTGTTTACTGT | TCTCTTCCAGTTCTTCCGTGCTAAA | C | T |
715641587 | Chr07 | 33842222 | GAAGGTGACCAAGTTCATGCTGACCCACTTAATCCATCTAC | GAAGGTCGGAGTCAACGGATTGACCCACTTAATCCATCTAT | AGGACTCAGTAAGGTGGGGCTTTCTTCTTC | C | T |
715639238 | Chr07 | 42558166 | GAAGGTGACCAAGTTCATGCTATTGGATCAGGTGTGATGCCG | GAAGGTCGGAGTCAACGGATTATTGGATCAGGTGTGATGCCA | AGGGGTGATCATGACACGCTTAC | G | A |
715646608 | Chr07 | 45792744 | GAAGGTGACCAAGTTCATGCTGCTGATTCATCATGCTCAC | GAAGGTCGGAGTCAACGGATTGCTGATTCATCATGCTCAA | GAATCTAAACTTGAACCACGTGT | C | A |
715646685 | Chr08 | 129003 | GAAGGTGACCAAGTTCATGCTGGATTTGGGGGAGAAGAAG | GAAGGTCGGAGTCAACGGATTGGATTTGGGGGAGAAGAAA | AAATTTTTTTCTCACCCCCACA | G | A |
715645832 | Chr08 | 3020556 | GAAGGTGACCAAGTTCATGCTCTCATGTAAACAATTGAT | GAAGGTCGGAGTCAACGGATTCTCATGTAAACAATTGAC | TTGCACATGTAATGCTTGGAAG | T | C |
715649757 | Chr08 | 6483262 | GAAGGTGACCAAGTTCATGCTCAAGCCTAATGACCACTGACACACA | GAAGGTCGGAGTCAACGGATTCAAGCCTAATGACCACTGACACACC | TGAAGTATTTGCAGAAAATTGGAGAC | A | C |
715647414 | Chr08 | 9422765 | GAAGGTGACCAAGTTCATGCTCAACTGCGACAAGATGGTACT | GAAGGTCGGAGTCAACGGATTCAACTGCGACAAGATGGTACC | ATAAACAAAAAATAGTGTCTCG | T | C |
715648702 | Chr08 | 15144723 | GAAGGTGACCAAGTTCATGCTGTCTTCTTCTTCCTTTTCTATT | GAAGGTCGGAGTCAACGGATTGTCTTCTTCTTCCTTTTCTATC | TTGCATAAAACGCATTAAATGT | T | C |
715644789 | Chr08 | 24424087 | GAAGGTGACCAAGTTCATGCTGCCTTAGTTGACACCTCCATTT | GAAGGTCGGAGTCAACGGATTGCCTTAGTTGACACCTCCATTC | CTCTTCATCGTGTGATGGTTGG | T | C |
715639796 | Chr08 | 33391365 | GAAGGTGACCAAGTTCATGCTGAGGAAAGGAATGCTTTCAACTG | GAAGGTCGGAGTCAACGGATTGAGGAAAGGAATGCTTTCAACTA | GGTGGTCAAATTCAACTAGGATGGC | G | A |
715640428 | Chr08 | 36879821 | GAAGGTGACCAAGTTCATGCTGCTACAAACAAATCATGATGCATCC | GAAGGTCGGAGTCAACGGATTGCTACAAACAAATCATGATGCATCT | ACTCTGTCATGAACGCGGTCTT | C | T |
715650893 | Chr08 | 39711359 | GAAGGTGACCAAGTTCATGCTTCATATCTTCAAAAAACT | GAAGGTCGGAGTCAACGGATTTCATATCTTCAAAAAACC | AGTCACATCCCATCAAATTCGG | T | C |
715648689 | Chr08 | 48679942 | GAAGGTGACCAAGTTCATGCTTATTTGCATGGCCCGACCAACCTC | GAAGGTCGGAGTCAACGGATTTATTTGCATGGCCCGACCAACCTT | CTTTAGTTTAGTAGGTTAAGTAAT | C | T |
715639302 | Chr08 | 51313104 | GAAGGTGACCAAGTTCATGCTTCTCTAACTCGTGCGTACG | GAAGGTCGGAGTCAACGGATTTCTCTAACTCGTGCGTACA | GTTTGTTGGGTTTATTATCGGA | G | A |
715650660 | Chr08 | 59634577 | GAAGGTGACCAAGTTCATGCTACATGATAAACACAAAAA | GAAGGTCGGAGTCAACGGATTACATGATAAACACAAAAG | TAGCCATATTGTTCTTCTATAAAAAAGCAG | A | G |
715650429 | Chr09 | 298696 | GAAGGTGACCAAGTTCATGCTCATTTGGTACCTCGTCTCAG | GAAGGTCGGAGTCAACGGATTCATTTGGTACCTCGTCTCAA | ACAAGAACTGGAACTAGTATAC | G | A |
715639476 | Chr09 | 3133765 | GAAGGTGACCAAGTTCATGCTCCTCTTACTCAAGAAAGCCAAGAT | GAAGGTCGGAGTCAACGGATTCCTCTTACTCAAGAAAGCCAAGAC | TCTATCTATCACGGATAAGTTG | T | C |
715639339 | Chr09 | 12175377 | GAAGGTGACCAAGTTCATGCTGCTTATAGTGTGGAGAGCAG | GAAGGTCGGAGTCAACGGATTGCTTATAGTGTGGAGAGCAA | GATTTCTCAATAGAAACATGCC | G | A |
715646043 | Chr09 | 21807115 | GAAGGTGACCAAGTTCATGCTGTGAGTACTAAGATTTGTGGTCTGG | GAAGGTCGGAGTCAACGGATTGTGAGTACTAAGATTTGTGGTCTGA | CGATAAGAACATTTGACACCCACTGT | G | A |
715646065 | Chr09 | 24807436 | GAAGGTGACCAAGTTCATGCTCCCTTGTGAGAAAGTATTGATTGTG | GAAGGTCGGAGTCAACGGATTCCCTTGTGAGAAAGTATTGATTGTA | GCCAATTTAGAAAGTTCTCCATGT | G | A |
ID | 染色体 Chromosome | 基因组位置 SNP position in chromosome v1.0 | FAM引物 Primer_AlleleFAM | HEX引物 Primer_AlleleHEX | 通用引物 Universal primer | FAM等 位变异 Allele_ FAM | HEX等 位变异 Allele_ HEX |
715643007 | Chr10 | 95419 | GAAGGTGACCAAGTTCATGCTAACAATACTACGTTTAAT | GAAGGTCGGAGTCAACGGATTAACAATACTACGTTTAAC | GTGGACTGAGCCCTGTTAACTGGAAGCTAA | T | C |
715650121 | Chr10 | 6367592 | GAAGGTGACCAAGTTCATGCTTATTAAGGGAAAGATCGAC | GAAGGTCGGAGTCAACGGATTTATTAAGGGAAAGATCGAT | TGGACCCATGACCACAAGTTAAGAGCCTTC | C | T |
715641901 | Chr10 | 18965279 | GAAGGTGACCAAGTTCATGCTCCCCTAGTAGCCTTATACCAAC | GAAGGTCGGAGTCAACGGATTCCCCTAGTAGCCTTATACCAAT | TATTGGTAAGCCTGTTGAGGCA | C | T |
715644023 | Chr10 | 27898392 | GAAGGTGACCAAGTTCATGCTGAGCATCGTTTGGTAGAGCACAAGT | GAAGGTCGGAGTCAACGGATTGAGCATCGTTTGGTAGAGCACAAGG | GGCGCCCACCGTGGGGTTCGAA | T | G |
715640671 | Chr10 | 30260059 | GAAGGTGACCAAGTTCATGCTAGAGATTGGATGCATGAGTCGCCA | GAAGGTCGGAGTCAACGGATTAGAGATTGGATGCATGAGTCGCCG | GTGCGTAAGGCTGCCCTACCGAGG | A | G |
715639617 | Chr10 | 33411083 | GAAGGTGACCAAGTTCATGCTGCCTCATGCTTTATTGACAGGGC | GAAGGTCGGAGTCAACGGATTGCCTCATGCTTTATTGACAGGGT | ACACTTGTTTCTTTGCATCATGGA | C | T |
715640169 | Chr10 | 36497500 | GAAGGTGACCAAGTTCATGCTCACCTTGCCAGAATACTTCACCT | GAAGGTCGGAGTCAACGGATTCACCTTGCCAGAATACTTCACCC | CTGAGGATCCTGGGAAGCATTG | T | C |
715639540 | Chr10 | 42706527 | GAAGGTGACCAAGTTCATGCTGCTCACATCTTACTCATACCAACTG | GAAGGTCGGAGTCAACGGATTGCTCACATCTTACTCATACCAACTA | AACAATGGATGTGGTGACTTATCA | G | A |
715641318 | Chr11 | 16520 | GAAGGTGACCAAGTTCATGCTAAATACTTTCAACGTTTG | GAAGGTCGGAGTCAACGGATTAAATACTTTCAACGTTTA | AACCCTCTCGTGTGAAATTTCCACTATGAC | G | A |
715645562 | Chr11 | 3190094 | GAAGGTGACCAAGTTCATGCTTTTGATGAATGAATTTCG | GAAGGTCGGAGTCAACGGATTTTTGATGAATGAATTTCA | GTTTATATTGGAGCCTGCATGTGTTAGCTA | G | A |
715650149 | Chr11 | 6641086 | GAAGGTGACCAAGTTCATGCTGACCCAGCAGCTATGTCTGTTTTA | GAAGGTCGGAGTCAACGGATTGACCCAGCAGCTATGTCTGTTTTG | AGAATGCATAGCACTTATTTGATTGTG | A | G |
715639655 | Chr11 | 12487977 | GAAGGTGACCAAGTTCATGCTTCTCACCACCTGTACTCCAAACCTA | GAAGGTCGGAGTCAACGGATTTCTCACCACCTGTACTCCAAACCTG | TCGACATTAAACAATACCAAGGAGAATCC | A | G |
715644528 | Chr11 | 21570007 | GAAGGTGACCAAGTTCATGCTCCAGCTACACCTCAATAGCTAGA | GAAGGTCGGAGTCAACGGATTCCAGCTACACCTCAATAGCTAGG | GAAGGAGGCTGGCCAAAGTACCCACA | A | G |
715644319 | Chr11 | 24580005 | GAAGGTGACCAAGTTCATGCTGGAAGGTACAAGGGACGAGTATTTG | GAAGGTCGGAGTCAACGGATTGGAAGGTACAAGGGACGAGTATTTA | AACGCCCGAGGACGAGACGGTACACTAA | G | A |
715641793 | Chr11 | 33339240 | GAAGGTGACCAAGTTCATGCTTTTGAAGTGGGGGTTTGGAGTCCG | GAAGGTCGGAGTCAACGGATTTTTGAAGTGGGGGTTTGGAGTCCA | GCCAATAAGAAACATCCCGACC | G | A |
715648007 | Chr11 | 42300383 | GAAGGTGACCAAGTTCATGCTCAAACAATAGGAGAATAGCATT | GAAGGTCGGAGTCAACGGATTCAAACAATAGGAGAATAGCATC | TGAACCTTTTAACACCTCCTTA | T | C |
Table 3 Information of 88 KASP-SNP markers in this study
ID | 染色体 Chromosome | 基因组位置 SNP position in chromosome v1.0 | FAM引物 Primer_AlleleFAM | HEX引物 Primer_AlleleHEX | 通用引物 Universal primer | FAM等 位变异 Allele_ FAM | HEX等 位变异 Allele_ HEX |
---|---|---|---|---|---|---|---|
715645089 | Chr01 | 3044239 | GAAGGTGACCAAGTTCATGCTTTAAGATTCATGTGCATG | GAAGGTCGGAGTCAACGGATTTTAAGATTCATGTGCATT | GTTTGGTTCCTCTGAATTTATATTTATTTT | G | T |
715643138 | Chr01 | 24744217 | GAAGGTGACCAAGTTCATGCTGCAGTACTCACAACATCAATC | GAAGGTCGGAGTCAACGGATTGCAGTACTCACAACATCAATA | TCTCTAGAAGAGCTTGCAAGGACTATTATG | C | A |
715640479 | Chr01 | 35496757 | GAAGGTGACCAAGTTCATGCTGTCATAGAATATGCCGATG | GAAGGTCGGAGTCAACGGATTGTCATAGAATATGCCGATT | TATTCTAAAAGTATGTCTTGCA | G | T |
715639381 | Chr01 | 37227412 | GAAGGTGACCAAGTTCATGCTCAGGTTAGGGTTAGGGTTTGCTTT | GAAGGTCGGAGTCAACGGATTCAGGTTAGGGTTAGGGTTTGCTTC | GTCTCCGCGGACTTTCCGGGATC | T | C |
715648889 | Chr01 | 43699409 | GAAGGTGACCAAGTTCATGCTCTCAGTGTTCGTCATGTGCCATGTA | GAAGGTCGGAGTCAACGGATTCTCAGTGTTCGTCATGTGCCATGTG | ATGGGACTGAGCAGAAACCTTA | A | G |
715645921 | Chr01 | 48941111 | GAAGGTGACCAAGTTCATGCTCACCAATAGTTTCAAACTACTAT | GAAGGTCGGAGTCAACGGATTCACCAATAGTTTCAAACTACTAC | TGATAACGTGATGTGATCTAGGTAAC | T | C |
715649479 | Chr02 | 6743 | GAAGGTGACCAAGTTCATGCTGGTTTAACTGGGGTGTCTAGA | GAAGGTCGGAGTCAACGGATTGGTTTAACTGGGGTGTCTAGG | TGTCAATCTCCAATCCACCAAG | A | G |
715640819 | Chr02 | 5855171 | GAAGGTGACCAAGTTCATGCTGGTGGCGAATGAATTCAAATTGC | GAAGGTCGGAGTCAACGGATTGGTGGCGAATGAATTCAAATTGT | AAAGCTATACATGCCACTAAAGTTTTG | C | T |
715647790 | Chr02 | 8927833 | GAAGGTGACCAAGTTCATGCTGGTTCATGCTTTAGGCTTAG | GAAGGTCGGAGTCAACGGATTGGTTCATGCTTTAGGCTTAA | ACCACTAGTAAAATTCAATTTCAGTTTCTT | G | A |
715642024 | Chr02 | 12142956 | GAAGGTGACCAAGTTCATGCTGGCTTCGTTTGCATGAATGA | GAAGGTCGGAGTCAACGGATTGGCTTCGTTTGCATGAATGG | CACCTTAGGACCAAGTAAACACAAACACAA | A | G |
715641350 | Chr02 | 21494397 | GAAGGTGACCAAGTTCATGCTGACTTGGACATTATTCTTATGGATG | GAAGGTCGGAGTCAACGGATTGACTTGGACATTATTCTTATGGATA | ATGTTAACTTTTTAAAAAAAAACCTC | G | A |
715648528 | Chr02 | 24042084 | GAAGGTGACCAAGTTCATGCTAACTAAAGGGCCTCGACCCC | GAAGGTCGGAGTCAACGGATTAACTAAAGGGCCTCGACCCT | GTTTTCATGGCACCGAGGCGAATACGAAGA | C | T |
715647099 | Chr02 | 32859750 | GAAGGTGACCAAGTTCATGCTGGTAAGTTTGGTGCTATTGCTT | GAAGGTCGGAGTCAACGGATTGGTAAGTTTGGTGCTATTGCTC | TAACCTTTTTCCTCACGTTTCTT | T | C |
715646488 | Chr02 | 36676613 | GAAGGTGACCAAGTTCATGCTCCATCCTTAAGAACTTGTGCAT | GAAGGTCGGAGTCAACGGATTCCATCCTTAAGAACTTGTGCAC | ACACCTTCAATGCTGTGGTAACA | T | C |
715647680 | Chr02 | 43900872 | GAAGGTGACCAAGTTCATGCTCAAGCTCTGTCATGCTCATGC | GAAGGTCGGAGTCAACGGATTCAAGCTCTGTCATGCTCATGT | ATAGTCTAGACCACATCACACG | C | T |
715648447 | Chr02 | 48531519 | GAAGGTGACCAAGTTCATGCTGGTTGTCAAAGGTTTAAAGCTG | GAAGGTCGGAGTCAACGGATTGGTTGTCAAAGGTTTAAAGCTA | GATTCTTCAGTAAGAGTAACCATG | G | A |
ID | 染色体 Chromosome | 基因组位置 SNP position in chromosome v1.0 | FAM引物 Primer_AlleleFAM | HEX引物 Primer_AlleleHEX | 通用引物 Universal primer | FAM等 位变异 Allele_ FAM | HEX等 位变异 Allele_ HEX |
715644947 | Chr03 | 6366468 | GAAGGTGACCAAGTTCATGCTCCGTGTCACTGAGATCACTATC | GAAGGTCGGAGTCAACGGATTCCGTGTCACTGAGATCACTATT | AATACGAGGATGAATACATTTC | C | T |
715647580 | Chr03 | 12483803 | GAAGGTGACCAAGTTCATGCTAAAAACCTATCAAAGTAG | GAAGGTCGGAGTCAACGGATTAAAAACCTATCAAAGTAA | CTTTGTTCTTTGTTTCTCACAT | G | A |
715642031 | Chr03 | 15073563 | GAAGGTGACCAAGTTCATGCTTAGTTTTCATATTCAACC | GAAGGTCGGAGTCAACGGATTTAGTTTTCATATTCAACT | ATGAGAAATCAACTGGATCAAA | C | T |
715643408 | Chr03 | 27104732 | GAAGGTGACCAAGTTCATGCTGTCAGACAAACTCATTTACCCCG | GAAGGTCGGAGTCAACGGATTGTCAGACAAACTCATTTACCCCA | ATAAATCATTCCACCATCTAGA | G | A |
715649919 | Chr03 | 30251280 | GAAGGTGACCAAGTTCATGCTGCATTAATAGAGGATAGATGAAAC | GAAGGTCGGAGTCAACGGATTGCATTAATAGAGGATAGATGAAAT | GTTGTCTCATTGATAACCCTCA | C | T |
715650183 | Chr03 | 39786455 | GAAGGTGACCAAGTTCATGCTGTTTGCCCTTCTATTGGTATA | GAAGGTCGGAGTCAACGGATTGTTTGCCCTTCTATTGGTATC | TCTCCAACAAGCAAGAGCACTA | A | C |
715649769 | Chr04 | 3592 | GAAGGTGACCAAGTTCATGCTGTGCAAACCTGCAACTCAAAATTGC | GAAGGTCGGAGTCAACGGATTGTGCAAACCTGCAACTCAAAATTGA | ATCAGAACTGGAAGGATATCTT | C | A |
715647290 | Chr04 | 3109241 | GAAGGTGACCAAGTTCATGCTCCCTCTCTACCTAAGAACATGA | GAAGGTCGGAGTCAACGGATTCCCTCTCTACCTAAGAACATGC | GTTTTATGGTTAAGTGGTTAGTTTTGTAAG | A | C |
715641595 | Chr04 | 6493282 | GAAGGTGACCAAGTTCATGCTCGATATATCACCCATTAAC | GAAGGTCGGAGTCAACGGATTCGATATATCACCCATTAAA | ACCTTATAGTGTTTTGTTATCA | C | A |
715642949 | Chr04 | 15465426 | GAAGGTGACCAAGTTCATGCTGACTTCCTTATGCAGATCAACAT | GAAGGTCGGAGTCAACGGATTGACTTCCTTATGCAGATCAACAC | GAGTTTGATGAAGTACTTCATAAC | T | C |
715650920 | Chr04 | 21774557 | GAAGGTGACCAAGTTCATGCTTCCCACACACACTCACATCCAACAC | GAAGGTCGGAGTCAACGGATTTCCCACACACACTCACATCCAACAT | TGCTTAAAAGGACCACCTCGCTTA | C | T |
715650671 | Chr04 | 25684069 | GAAGGTGACCAAGTTCATGCTTGTTAGAACGCTGGTGCAT | GAAGGTCGGAGTCAACGGATTTGTTAGAACGCTGGTGCAG | GAAAAGTAAAATCTGCATCACC | T | G |
715642248 | Chr04 | 34571194 | GAAGGTGACCAAGTTCATGCTTCCCTTAACTTACTTGTGG | GAAGGTCGGAGTCAACGGATTTCCCTTAACTTACTTGTGA | CTTTTCAGGCTTGCTTTGCAGAC | G | A |
715639507 | Chr04 | 37382175 | GAAGGTGACCAAGTTCATGCTGTCACGGTGAATATTACCCG | GAAGGTCGGAGTCAACGGATTGTCACGGTGAATATTACCCA | AGAAGGTCAGATAGATAGGTCC | G | A |
715646125 | Chr04 | 43085220 | GAAGGTGACCAAGTTCATGCTCCTAATAAGCTTAAGTCAATACCTG | GAAGGTCGGAGTCAACGGATTCCTAATAAGCTTAAGTCAATACCTT | AAAACTGAAAAGTGAAATGCTC | G | T |
715639543 | Chr05 | 6447545 | GAAGGTGACCAAGTTCATGCTGTCGATTGAAGGCTTTATCTCAT | GAAGGTCGGAGTCAACGGATTGTCGATTGAAGGCTTTATCTCAC | ACATTGAAATCAAACTCACACACTAA | T | C |
715644469 | Chr05 | 9344921 | GAAGGTGACCAAGTTCATGCTGAGTGTGCCCTAAAACAAAATATC | GAAGGTCGGAGTCAACGGATTGAGTGTGCCCTAAAACAAAATATA | CTTGTAGCAGTTTTCTATCACGAGAGTATC | C | A |
715645339 | Chr05 | 39192763 | GAAGGTGACCAAGTTCATGCTGCTGAGCTAAGACTATGAATCGGGC | GAAGGTCGGAGTCAACGGATTGCTGAGCTAAGACTATGAATCGGGT | TCCTTGTTAAATGTGCTCATTC | C | T |
715646737 | Chr05 | 40469914 | GAAGGTGACCAAGTTCATGCTACACACCCTTCTTTCTCTCCTCTCG | GAAGGTCGGAGTCAACGGATTACACACCCTTCTTTCTCTCCTCTCT | AGGACAACCACTCATTTTTGCTC | G | T |
715650987 | Chr06 | 15998 | GAAGGTGACCAAGTTCATGCTCCAAAGGAGTCCACATTCA | GAAGGTCGGAGTCAACGGATTCCAAAGGAGTCCACATTCC | GGCCTACTAGTTTTACAAGAATGTTC | A | C |
715647844 | Chr06 | 6504361 | GAAGGTGACCAAGTTCATGCTCTCTTCTAATTCAGGACCAAATC | GAAGGTCGGAGTCAACGGATTCTCTTCTAATTCAGGACCAAATT | CGAGGTAGGCAAGCCTTCCCTT | C | T |
715640066 | Chr06 | 9341450 | GAAGGTGACCAAGTTCATGCTGGGGCCAACCTCAAATTTA | GAAGGTCGGAGTCAACGGATTGGGGCCAACCTCAAATTTG | GTGTCCCCTTAATCATTTCACATTGTTC | A | G |
715645954 | Chr06 | 15786595 | GAAGGTGACCAAGTTCATGCTGACCTTCTGAAGGAACTGA | GAAGGTCGGAGTCAACGGATTGACCTTCTGAAGGAACTGG | ATGCAGGTAAAACCAGTGGTCCAGAC | A | G |
715650222 | Chr06 | 18501260 | GAAGGTGACCAAGTTCATGCTGTCACAATGAGGCCTTCTCTC | GAAGGTCGGAGTCAACGGATTGTCACAATGAGGCCTTCTCTT | ATCAGTATGATTCTACATGTTTTTGG | C | T |
715646818 | Chr06 | 21496816 | GAAGGTGACCAAGTTCATGCTAAATTACACTAGCATAAT | GAAGGTCGGAGTCAACGGATTAAATTACACTAGCATAAC | GAGCCATTTGTGTTTGAATATG | T | C |
715645677 | Chr06 | 27370471 | GAAGGTGACCAAGTTCATGCTGAATAAAGAGTGATGATA | GAAGGTCGGAGTCAACGGATTGAATAAAGAGTGATGATG | ACATGGCCATGTATTCCGTCTTGGTTTGGT | A | G |
715639203 | Chr06 | 30199530 | GAAGGTGACCAAGTTCATGCTGACATGTTCTTGCATTATGA | GAAGGTCGGAGTCAACGGATTGACATGTTCTTGCATTATGG | TGGTACCTTTGATGTATCACACT | A | G |
715639367 | Chr06 | 31688381 | GAAGGTGACCAAGTTCATGCTTCCTCTTCCTGCACCATAGTC | GAAGGTCGGAGTCAACGGATTTCCTCTTCCTGCACCATAGTT | CATGTGAGCAAGTGTTTGGTGGCATTGAAC | C | T |
ID | 染色体 Chromosome | 基因组位置 SNP position in chromosome v1.0 | FAM引物 Primer_AlleleFAM | HEX引物 Primer_AlleleHEX | 通用引物 Universal primer | FAM等 位变异 Allele_ FAM | HEX等 位变异 Allele_ HEX |
715648393 | Chr07 | 61520 | GAAGGTGACCAAGTTCATGCTGTTGTCTTTCAATGAACGAT | GAAGGTCGGAGTCAACGGATTGTTGTCTTTCAATGAACGAC | AAGGCAGGAATCTTTAAAAGCT | T | C |
715645699 | Chr07 | 1153000 | GAAGGTGACCAAGTTCATGCTTGAGTTCACGTGCATTGGGCATG | GAAGGTCGGAGTCAACGGATTTGAGTTCACGTGCATTGGGCATT | CCAAACAACATAAAGCAATTTCTAACAAAC | G | T |
715648625 | Chr07 | 9516304 | GAAGGTGACCAAGTTCATGCTGCATGTAGTGTTTTTAGTTTC | GAAGGTCGGAGTCAACGGATTGCATGTAGTGTTTTTAGTTTT | CCATATCACTAGGACTCTGAAC | C | T |
715648880 | Chr07 | 12261154 | GAAGGTGACCAAGTTCATGCTGACATCATCTTTGCAGTGAAC | GAAGGTCGGAGTCAACGGATTGACATCATCTTTGCAGTGAAT | TAATGGTCTTGATAAGGAGAGC | C | T |
715650406 | Chr07 | 15316545 | GAAGGTGACCAAGTTCATGCTTGACATAAATTGTGAAAG | GAAGGTCGGAGTCAACGGATTTGACATAAATTGTGAAAA | AAAGAATGTGAAAGAAGTCCAC | G | A |
715642111 | Chr07 | 18479982 | GAAGGTGACCAAGTTCATGCTCCGTAAGCTGGGACTTAACAGAAAT | GAAGGTCGGAGTCAACGGATTCCGTAAGCTGGGACTTAACAGAAAG | CCTACATTTAGGGTCCTTGTGTTTTT | T | G |
715643102 | Chr07 | 24160043 | GAAGGTGACCAAGTTCATGCTAGCAAGGGCGGATCAAAGGA | GAAGGTCGGAGTCAACGGATTAGCAAGGGCGGATCAAAGGC | CCTCCCCTTGAGAATCCTCCTG | A | C |
715640138 | Chr07 | 30148305 | GAAGGTGACCAAGTTCATGCTCTGTTTGCTTCTGTTTACTGC | GAAGGTCGGAGTCAACGGATTCTGTTTGCTTCTGTTTACTGT | TCTCTTCCAGTTCTTCCGTGCTAAA | C | T |
715641587 | Chr07 | 33842222 | GAAGGTGACCAAGTTCATGCTGACCCACTTAATCCATCTAC | GAAGGTCGGAGTCAACGGATTGACCCACTTAATCCATCTAT | AGGACTCAGTAAGGTGGGGCTTTCTTCTTC | C | T |
715639238 | Chr07 | 42558166 | GAAGGTGACCAAGTTCATGCTATTGGATCAGGTGTGATGCCG | GAAGGTCGGAGTCAACGGATTATTGGATCAGGTGTGATGCCA | AGGGGTGATCATGACACGCTTAC | G | A |
715646608 | Chr07 | 45792744 | GAAGGTGACCAAGTTCATGCTGCTGATTCATCATGCTCAC | GAAGGTCGGAGTCAACGGATTGCTGATTCATCATGCTCAA | GAATCTAAACTTGAACCACGTGT | C | A |
715646685 | Chr08 | 129003 | GAAGGTGACCAAGTTCATGCTGGATTTGGGGGAGAAGAAG | GAAGGTCGGAGTCAACGGATTGGATTTGGGGGAGAAGAAA | AAATTTTTTTCTCACCCCCACA | G | A |
715645832 | Chr08 | 3020556 | GAAGGTGACCAAGTTCATGCTCTCATGTAAACAATTGAT | GAAGGTCGGAGTCAACGGATTCTCATGTAAACAATTGAC | TTGCACATGTAATGCTTGGAAG | T | C |
715649757 | Chr08 | 6483262 | GAAGGTGACCAAGTTCATGCTCAAGCCTAATGACCACTGACACACA | GAAGGTCGGAGTCAACGGATTCAAGCCTAATGACCACTGACACACC | TGAAGTATTTGCAGAAAATTGGAGAC | A | C |
715647414 | Chr08 | 9422765 | GAAGGTGACCAAGTTCATGCTCAACTGCGACAAGATGGTACT | GAAGGTCGGAGTCAACGGATTCAACTGCGACAAGATGGTACC | ATAAACAAAAAATAGTGTCTCG | T | C |
715648702 | Chr08 | 15144723 | GAAGGTGACCAAGTTCATGCTGTCTTCTTCTTCCTTTTCTATT | GAAGGTCGGAGTCAACGGATTGTCTTCTTCTTCCTTTTCTATC | TTGCATAAAACGCATTAAATGT | T | C |
715644789 | Chr08 | 24424087 | GAAGGTGACCAAGTTCATGCTGCCTTAGTTGACACCTCCATTT | GAAGGTCGGAGTCAACGGATTGCCTTAGTTGACACCTCCATTC | CTCTTCATCGTGTGATGGTTGG | T | C |
715639796 | Chr08 | 33391365 | GAAGGTGACCAAGTTCATGCTGAGGAAAGGAATGCTTTCAACTG | GAAGGTCGGAGTCAACGGATTGAGGAAAGGAATGCTTTCAACTA | GGTGGTCAAATTCAACTAGGATGGC | G | A |
715640428 | Chr08 | 36879821 | GAAGGTGACCAAGTTCATGCTGCTACAAACAAATCATGATGCATCC | GAAGGTCGGAGTCAACGGATTGCTACAAACAAATCATGATGCATCT | ACTCTGTCATGAACGCGGTCTT | C | T |
715650893 | Chr08 | 39711359 | GAAGGTGACCAAGTTCATGCTTCATATCTTCAAAAAACT | GAAGGTCGGAGTCAACGGATTTCATATCTTCAAAAAACC | AGTCACATCCCATCAAATTCGG | T | C |
715648689 | Chr08 | 48679942 | GAAGGTGACCAAGTTCATGCTTATTTGCATGGCCCGACCAACCTC | GAAGGTCGGAGTCAACGGATTTATTTGCATGGCCCGACCAACCTT | CTTTAGTTTAGTAGGTTAAGTAAT | C | T |
715639302 | Chr08 | 51313104 | GAAGGTGACCAAGTTCATGCTTCTCTAACTCGTGCGTACG | GAAGGTCGGAGTCAACGGATTTCTCTAACTCGTGCGTACA | GTTTGTTGGGTTTATTATCGGA | G | A |
715650660 | Chr08 | 59634577 | GAAGGTGACCAAGTTCATGCTACATGATAAACACAAAAA | GAAGGTCGGAGTCAACGGATTACATGATAAACACAAAAG | TAGCCATATTGTTCTTCTATAAAAAAGCAG | A | G |
715650429 | Chr09 | 298696 | GAAGGTGACCAAGTTCATGCTCATTTGGTACCTCGTCTCAG | GAAGGTCGGAGTCAACGGATTCATTTGGTACCTCGTCTCAA | ACAAGAACTGGAACTAGTATAC | G | A |
715639476 | Chr09 | 3133765 | GAAGGTGACCAAGTTCATGCTCCTCTTACTCAAGAAAGCCAAGAT | GAAGGTCGGAGTCAACGGATTCCTCTTACTCAAGAAAGCCAAGAC | TCTATCTATCACGGATAAGTTG | T | C |
715639339 | Chr09 | 12175377 | GAAGGTGACCAAGTTCATGCTGCTTATAGTGTGGAGAGCAG | GAAGGTCGGAGTCAACGGATTGCTTATAGTGTGGAGAGCAA | GATTTCTCAATAGAAACATGCC | G | A |
715646043 | Chr09 | 21807115 | GAAGGTGACCAAGTTCATGCTGTGAGTACTAAGATTTGTGGTCTGG | GAAGGTCGGAGTCAACGGATTGTGAGTACTAAGATTTGTGGTCTGA | CGATAAGAACATTTGACACCCACTGT | G | A |
715646065 | Chr09 | 24807436 | GAAGGTGACCAAGTTCATGCTCCCTTGTGAGAAAGTATTGATTGTG | GAAGGTCGGAGTCAACGGATTCCCTTGTGAGAAAGTATTGATTGTA | GCCAATTTAGAAAGTTCTCCATGT | G | A |
ID | 染色体 Chromosome | 基因组位置 SNP position in chromosome v1.0 | FAM引物 Primer_AlleleFAM | HEX引物 Primer_AlleleHEX | 通用引物 Universal primer | FAM等 位变异 Allele_ FAM | HEX等 位变异 Allele_ HEX |
715643007 | Chr10 | 95419 | GAAGGTGACCAAGTTCATGCTAACAATACTACGTTTAAT | GAAGGTCGGAGTCAACGGATTAACAATACTACGTTTAAC | GTGGACTGAGCCCTGTTAACTGGAAGCTAA | T | C |
715650121 | Chr10 | 6367592 | GAAGGTGACCAAGTTCATGCTTATTAAGGGAAAGATCGAC | GAAGGTCGGAGTCAACGGATTTATTAAGGGAAAGATCGAT | TGGACCCATGACCACAAGTTAAGAGCCTTC | C | T |
715641901 | Chr10 | 18965279 | GAAGGTGACCAAGTTCATGCTCCCCTAGTAGCCTTATACCAAC | GAAGGTCGGAGTCAACGGATTCCCCTAGTAGCCTTATACCAAT | TATTGGTAAGCCTGTTGAGGCA | C | T |
715644023 | Chr10 | 27898392 | GAAGGTGACCAAGTTCATGCTGAGCATCGTTTGGTAGAGCACAAGT | GAAGGTCGGAGTCAACGGATTGAGCATCGTTTGGTAGAGCACAAGG | GGCGCCCACCGTGGGGTTCGAA | T | G |
715640671 | Chr10 | 30260059 | GAAGGTGACCAAGTTCATGCTAGAGATTGGATGCATGAGTCGCCA | GAAGGTCGGAGTCAACGGATTAGAGATTGGATGCATGAGTCGCCG | GTGCGTAAGGCTGCCCTACCGAGG | A | G |
715639617 | Chr10 | 33411083 | GAAGGTGACCAAGTTCATGCTGCCTCATGCTTTATTGACAGGGC | GAAGGTCGGAGTCAACGGATTGCCTCATGCTTTATTGACAGGGT | ACACTTGTTTCTTTGCATCATGGA | C | T |
715640169 | Chr10 | 36497500 | GAAGGTGACCAAGTTCATGCTCACCTTGCCAGAATACTTCACCT | GAAGGTCGGAGTCAACGGATTCACCTTGCCAGAATACTTCACCC | CTGAGGATCCTGGGAAGCATTG | T | C |
715639540 | Chr10 | 42706527 | GAAGGTGACCAAGTTCATGCTGCTCACATCTTACTCATACCAACTG | GAAGGTCGGAGTCAACGGATTGCTCACATCTTACTCATACCAACTA | AACAATGGATGTGGTGACTTATCA | G | A |
715641318 | Chr11 | 16520 | GAAGGTGACCAAGTTCATGCTAAATACTTTCAACGTTTG | GAAGGTCGGAGTCAACGGATTAAATACTTTCAACGTTTA | AACCCTCTCGTGTGAAATTTCCACTATGAC | G | A |
715645562 | Chr11 | 3190094 | GAAGGTGACCAAGTTCATGCTTTTGATGAATGAATTTCG | GAAGGTCGGAGTCAACGGATTTTTGATGAATGAATTTCA | GTTTATATTGGAGCCTGCATGTGTTAGCTA | G | A |
715650149 | Chr11 | 6641086 | GAAGGTGACCAAGTTCATGCTGACCCAGCAGCTATGTCTGTTTTA | GAAGGTCGGAGTCAACGGATTGACCCAGCAGCTATGTCTGTTTTG | AGAATGCATAGCACTTATTTGATTGTG | A | G |
715639655 | Chr11 | 12487977 | GAAGGTGACCAAGTTCATGCTTCTCACCACCTGTACTCCAAACCTA | GAAGGTCGGAGTCAACGGATTTCTCACCACCTGTACTCCAAACCTG | TCGACATTAAACAATACCAAGGAGAATCC | A | G |
715644528 | Chr11 | 21570007 | GAAGGTGACCAAGTTCATGCTCCAGCTACACCTCAATAGCTAGA | GAAGGTCGGAGTCAACGGATTCCAGCTACACCTCAATAGCTAGG | GAAGGAGGCTGGCCAAAGTACCCACA | A | G |
715644319 | Chr11 | 24580005 | GAAGGTGACCAAGTTCATGCTGGAAGGTACAAGGGACGAGTATTTG | GAAGGTCGGAGTCAACGGATTGGAAGGTACAAGGGACGAGTATTTA | AACGCCCGAGGACGAGACGGTACACTAA | G | A |
715641793 | Chr11 | 33339240 | GAAGGTGACCAAGTTCATGCTTTTGAAGTGGGGGTTTGGAGTCCG | GAAGGTCGGAGTCAACGGATTTTTGAAGTGGGGGTTTGGAGTCCA | GCCAATAAGAAACATCCCGACC | G | A |
715648007 | Chr11 | 42300383 | GAAGGTGACCAAGTTCATGCTCAAACAATAGGAGAATAGCATT | GAAGGTCGGAGTCAACGGATTCAAACAATAGGAGAATAGCATC | TGAACCTTTTAACACCTCCTTA | T | C |
染色体 Chromosome | 标记数量 Number of marker |
---|---|
Chr01 | 6 |
Chr02 | 10 |
Chr03 | 6 |
Chr04 | 9 |
Chr05 | 4 |
Chr06 | 9 |
Chr07 | 11 |
Chr08 | 12 |
Chr09 | 5 |
Chr10 | 8 |
Chr11 | 8 |
Table 4 Distribution of the polymorphic markers on different chromosomes
染色体 Chromosome | 标记数量 Number of marker |
---|---|
Chr01 | 6 |
Chr02 | 10 |
Chr03 | 6 |
Chr04 | 9 |
Chr05 | 4 |
Chr06 | 9 |
Chr07 | 11 |
Chr08 | 12 |
Chr09 | 5 |
Chr10 | 8 |
Chr11 | 8 |
ID | 等位变异 Alleles | 缺失率 Missing rate | 多态性信息含量 Polymorphism information content | 最小等位 变异频率 Minor allele frequency |
---|---|---|---|---|
715639203 | A/G | 0.05 | 0.171 | 0.045 |
715639238 | G/A | 0 | 0.491 | 0.432 |
715639302 | G/A | 0.05 | 0.171 | 0.045 |
715639339 | G/A | 0 | 0.087 | 0.045 |
715639367 | C/T | 0.20 | 0.435 | 0.045 |
715639381 | T/C | 0 | 0.087 | 0.045 |
715639476 | T/C | 0.05 | 0.171 | 0.045 |
715639507 | G/A | 0 | 0.201 | 0.114 |
715639540 | G/A | 0 | 0.087 | 0.045 |
715639543 | T/C | 0.02 | 0.130 | 0.045 |
715639617 | C/T | 0 | 0.044 | 0.023 |
715639655 | A/G | 0 | 0.087 | 0.045 |
715639796 | G/A | 0 | 0.201 | 0.114 |
715640066 | A/G | 0 | 0.325 | 0.205 |
715640138 | C/T | 0 | 0.165 | 0.091 |
715640169 | T/C | 0 | 0.127 | 0.068 |
715640428 | C/T | 0 | 0.087 | 0.045 |
715640479 | G/T | 0.09 | 0.252 | 0.045 |
715640671 | A/G | 0 | 0.087 | 0.045 |
715640819 | C/T | 0 | 0.087 | 0.045 |
715641318 | G/A | 0.02 | 0.130 | 0.045 |
715641350 | G/A | 0.11 | 0.576 | 0.318 |
715641587 | C/T | 0 | 0.165 | 0.091 |
715641595 | C/A | 0.27 | 0.726 | 0.432 |
715641793 | G/A | 0 | 0.087 | 0.045 |
715641901 | C/T | 0.20 | 0.466 | 0.068 |
715642024 | A/G | 0.11 | 0.291 | 0.045 |
715642031 | C/T | 0.20 | 0.466 | 0.068 |
715642111 | T/G | 0 | 0.165 | 0.091 |
715642248 | G/A | 0.02 | 0.130 | 0.045 |
715642949 | T/C | 0 | 0.165 | 0.091 |
715643007 | T/C | 0.05 | 0.543 | 0.455 |
715643102 | A/C | 0 | 0.087 | 0.045 |
715643138 | C/A | 0.02 | 0.130 | 0.045 |
715643408 | G/A | 0.05 | 0.171 | 0.045 |
715644023 | T/G | 0.05 | 0.210 | 0.068 |
715644319 | G/A | 0 | 0.087 | 0.045 |
715644469 | C/A | 0 | 0.087 | 0.045 |
715644528 | A/G | 0 | 0.087 | 0.045 |
715644789 | T/C | 0 | 0.087 | 0.045 |
715644947 | C/T | 0 | 0.087 | 0.045 |
715645089 | G/T | 0.18 | 0.628 | 0.273 |
715645339 | C/T | 0 | 0.087 | 0.045 |
715645562 | G/A | 0.05 | 0.212 | 0.045 |
715645677 | A/G | 0 | 0.171 | 0.045 |
715645699 | G/T | 0.02 | 0.169 | 0.068 |
715645832 | T/C | 0.09 | 0.536 | 0.295 |
ID | 等位变异 Alleles | 缺失率 Missing rate | 多态性信息含量 Polymorphism information content | 最小等位 变异频率 Minor allele frequency |
715645921 | T/C | 0 | 0.127 | 0.068 |
715645954 | A/G | 0.07 | 0.212 | 0.045 |
715646043 | G/A | 0.23 | 0.469 | 0.045 |
715646065 | G/A | 0.07 | 0.349 | 0.136 |
715646125 | G/T | 0 | 0.397 | 0.273 |
715646488 | T/C | 0 | 0.236 | 0.136 |
715646608 | C/A | 0 | 0.127 | 0.068 |
715646685 | G/A | 0.02 | 0.510 | 0.409 |
715646737 | G/T | 0.02 | 0.130 | 0.045 |
715646818 | T/C | 0.09 | 0.601 | 0.386 |
715647099 | T/C | 0 | 0.491 | 0.432 |
715647290 | A/C | 0 | 0.351 | 0.227 |
715647414 | T/C | 0 | 0.268 | 0.159 |
715647580 | G/A | 0.07 | 0.404 | 0.182 |
715647680 | C/T | 0 | 0.044 | 0.023 |
715647790 | G/A | 0.02 | 0.274 | 0.136 |
715647844 | C/T | 0 | 0.165 | 0.091 |
715648007 | T/C | 0.02 | 0.169 | 0.068 |
715648393 | T/C | 0.05 | 0.507 | 0.341 |
715648447 | G/A | 0 | 0.087 | 0.045 |
715648528 | C/T | 0 | 0.397 | 0.273 |
715648625 | C/T | 0 | 0.268 | 0.159 |
715648689 | C/T | 0.30 | 0.590 | 0.068 |
715648702 | T/C | 0.25 | 0.557 | 0.091 |
715648880 | C/T | 0 | 0.165 | 0.091 |
715648889 | A/G | 0 | 0.087 | 0.045 |
715649479 | A/G | 0.02 | 0.130 | 0.045 |
715649757 | A/C | 0.05 | 0.280 | 0.114 |
715649769 | C/A | 0 | 0.044 | 0.023 |
715649919 | C/T | 0 | 0.449 | 0.341 |
715650121 | C/T | 0 | 0.268 | 0.159 |
715650149 | A/G | 0 | 0.236 | 0.136 |
715650183 | A/C | 0.02 | 0.130 | 0.045 |
715650222 | C/T | 0.05 | 0.210 | 0.068 |
715650406 | G/A | 0.09 | 0.354 | 0.114 |
715650429 | G/A | 0 | 0.351 | 0.227 |
715650660 | A/G | 0.07 | 0.252 | 0.045 |
715650671 | T/G | 0.23 | 0.527 | 0.091 |
715650893 | T/C | 0.09 | 0.252 | 0.045 |
715650920 | C/T | 0.02 | 0.206 | 0.091 |
715650987 | A/C | 0.02 | 0.206 | 0.091 |
Table 5 Amplification result of 88 KASP markers in 44 accessions
ID | 等位变异 Alleles | 缺失率 Missing rate | 多态性信息含量 Polymorphism information content | 最小等位 变异频率 Minor allele frequency |
---|---|---|---|---|
715639203 | A/G | 0.05 | 0.171 | 0.045 |
715639238 | G/A | 0 | 0.491 | 0.432 |
715639302 | G/A | 0.05 | 0.171 | 0.045 |
715639339 | G/A | 0 | 0.087 | 0.045 |
715639367 | C/T | 0.20 | 0.435 | 0.045 |
715639381 | T/C | 0 | 0.087 | 0.045 |
715639476 | T/C | 0.05 | 0.171 | 0.045 |
715639507 | G/A | 0 | 0.201 | 0.114 |
715639540 | G/A | 0 | 0.087 | 0.045 |
715639543 | T/C | 0.02 | 0.130 | 0.045 |
715639617 | C/T | 0 | 0.044 | 0.023 |
715639655 | A/G | 0 | 0.087 | 0.045 |
715639796 | G/A | 0 | 0.201 | 0.114 |
715640066 | A/G | 0 | 0.325 | 0.205 |
715640138 | C/T | 0 | 0.165 | 0.091 |
715640169 | T/C | 0 | 0.127 | 0.068 |
715640428 | C/T | 0 | 0.087 | 0.045 |
715640479 | G/T | 0.09 | 0.252 | 0.045 |
715640671 | A/G | 0 | 0.087 | 0.045 |
715640819 | C/T | 0 | 0.087 | 0.045 |
715641318 | G/A | 0.02 | 0.130 | 0.045 |
715641350 | G/A | 0.11 | 0.576 | 0.318 |
715641587 | C/T | 0 | 0.165 | 0.091 |
715641595 | C/A | 0.27 | 0.726 | 0.432 |
715641793 | G/A | 0 | 0.087 | 0.045 |
715641901 | C/T | 0.20 | 0.466 | 0.068 |
715642024 | A/G | 0.11 | 0.291 | 0.045 |
715642031 | C/T | 0.20 | 0.466 | 0.068 |
715642111 | T/G | 0 | 0.165 | 0.091 |
715642248 | G/A | 0.02 | 0.130 | 0.045 |
715642949 | T/C | 0 | 0.165 | 0.091 |
715643007 | T/C | 0.05 | 0.543 | 0.455 |
715643102 | A/C | 0 | 0.087 | 0.045 |
715643138 | C/A | 0.02 | 0.130 | 0.045 |
715643408 | G/A | 0.05 | 0.171 | 0.045 |
715644023 | T/G | 0.05 | 0.210 | 0.068 |
715644319 | G/A | 0 | 0.087 | 0.045 |
715644469 | C/A | 0 | 0.087 | 0.045 |
715644528 | A/G | 0 | 0.087 | 0.045 |
715644789 | T/C | 0 | 0.087 | 0.045 |
715644947 | C/T | 0 | 0.087 | 0.045 |
715645089 | G/T | 0.18 | 0.628 | 0.273 |
715645339 | C/T | 0 | 0.087 | 0.045 |
715645562 | G/A | 0.05 | 0.212 | 0.045 |
715645677 | A/G | 0 | 0.171 | 0.045 |
715645699 | G/T | 0.02 | 0.169 | 0.068 |
715645832 | T/C | 0.09 | 0.536 | 0.295 |
ID | 等位变异 Alleles | 缺失率 Missing rate | 多态性信息含量 Polymorphism information content | 最小等位 变异频率 Minor allele frequency |
715645921 | T/C | 0 | 0.127 | 0.068 |
715645954 | A/G | 0.07 | 0.212 | 0.045 |
715646043 | G/A | 0.23 | 0.469 | 0.045 |
715646065 | G/A | 0.07 | 0.349 | 0.136 |
715646125 | G/T | 0 | 0.397 | 0.273 |
715646488 | T/C | 0 | 0.236 | 0.136 |
715646608 | C/A | 0 | 0.127 | 0.068 |
715646685 | G/A | 0.02 | 0.510 | 0.409 |
715646737 | G/T | 0.02 | 0.130 | 0.045 |
715646818 | T/C | 0.09 | 0.601 | 0.386 |
715647099 | T/C | 0 | 0.491 | 0.432 |
715647290 | A/C | 0 | 0.351 | 0.227 |
715647414 | T/C | 0 | 0.268 | 0.159 |
715647580 | G/A | 0.07 | 0.404 | 0.182 |
715647680 | C/T | 0 | 0.044 | 0.023 |
715647790 | G/A | 0.02 | 0.274 | 0.136 |
715647844 | C/T | 0 | 0.165 | 0.091 |
715648007 | T/C | 0.02 | 0.169 | 0.068 |
715648393 | T/C | 0.05 | 0.507 | 0.341 |
715648447 | G/A | 0 | 0.087 | 0.045 |
715648528 | C/T | 0 | 0.397 | 0.273 |
715648625 | C/T | 0 | 0.268 | 0.159 |
715648689 | C/T | 0.30 | 0.590 | 0.068 |
715648702 | T/C | 0.25 | 0.557 | 0.091 |
715648880 | C/T | 0 | 0.165 | 0.091 |
715648889 | A/G | 0 | 0.087 | 0.045 |
715649479 | A/G | 0.02 | 0.130 | 0.045 |
715649757 | A/C | 0.05 | 0.280 | 0.114 |
715649769 | C/A | 0 | 0.044 | 0.023 |
715649919 | C/T | 0 | 0.449 | 0.341 |
715650121 | C/T | 0 | 0.268 | 0.159 |
715650149 | A/G | 0 | 0.236 | 0.136 |
715650183 | A/C | 0.02 | 0.130 | 0.045 |
715650222 | C/T | 0.05 | 0.210 | 0.068 |
715650406 | G/A | 0.09 | 0.354 | 0.114 |
715650429 | G/A | 0 | 0.351 | 0.227 |
715650660 | A/G | 0.07 | 0.252 | 0.045 |
715650671 | T/G | 0.23 | 0.527 | 0.091 |
715650893 | T/C | 0.09 | 0.252 | 0.045 |
715650920 | C/T | 0.02 | 0.206 | 0.091 |
715650987 | A/C | 0.02 | 0.206 | 0.091 |
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