›› 2011, Vol. 23 ›› Issue (5): 0-904.

• 园艺科学 •    

应用改良TAIL-PCR克隆黄瓜6PGDH基因上游序列

魏跃1,2,陈啸寅1,王全智1,陈劲枫2,*   

  1. 1江苏农林职业技术学院,江苏 镇江 212400;2南方蔬菜遗传改良重点开放实验室,南京农业大学,江苏 南京 210095
  • 收稿日期:1900-01-01 修回日期:1900-01-01 出版日期:2011-09-25 发布日期:2011-09-25

Isolation upstream sequence of 6PGDH gene from cucumber (Cucumis sativus L.) by modified TAIL-PCR

WEI Yue;CHEN Xiao-yin;WANG Quan-zhi;CHEN Jin-feng;*   

  1. 1Jiangsu Polytechnic College of Agriculture and Forestry, Zhenjiang 212400, China;2Key Laboratory of Southern Vegetable Crop Genetics Improvement, Nanjing Agricultural University, Nanjing 210095, China
  • Received:1900-01-01 Revised:1900-01-01 Online:2011-09-25 Published:2011-09-25

摘要: 运用改良的热不对称交错PCR(thermal asymmetric interlaced PCR, TAIL-PCR)对黄瓜6-磷酸葡萄糖酸脱氢酶基因(6-phosphogluconate dehydrogenase gene, 6PGDH)的上游序列进行了克隆。与最初的TAIL-PCR相比较,主要改进之处有:(1)根据Primer 5.0软件计算结果从随机RAPD引物库中筛选出合适的上游引物,低严谨和高严谨反应中的退火温度也分别进行了调整;(2)将热不对称交替反应继续应用到第3轮PCR扩增反应中以提高特异目的条带和减少非目的条带。经过3轮PCR扩增反应最终获得位于黄瓜6PGDH起始密码子ATG上游长度为517 bp新序列。试验结果表明,应用改良TAIL-PCR能快速、有效地克隆与已知区域相邻的序列。

关键词: 热不对称交错PCR, 6-磷酸葡萄糖酸脱氢酶, 黄瓜, 上游序列

Abstract: The upstream sequence of the 6-phosphogluconate dehydrogenase (6PGDH) gene from cucumber (C. sativus L.) was isolated using modified TAIL-PCR method. Compared with the original protocol, the main modifications of the TAIL-PCR were introduced here: (1)among the battery of random 10 bp primers originally developed for RAPD analysis, suitable primers were selected as short arbitrary upstream primers according to the Primer 5.0 software prediction prior to PCR, and the annealing temperatures of two different stringency circles were also adjusted to be optimal accordingly.(2)the asymmetric interlaced thermal cycle was also applied in tertiary PCR so that the target product could be further preferentially amplified over non-target products. A 517 bp sequence upstream to the start codon of the 6PGDH gene of cucumber was successfully isolated after three rounds of amplification. The final result demonstrated that the modified of TAIL-PCR was an instant and efficient method to clone the flanking sequences from known region.

Key words: Thermal asymmetric interlaced PCR (TAIL-PCR), 6-phosphogluconate dehydrogenase(6PGDH), Cucumis sativus L., upstream sequence