Genetic diversity analysis of 151 cherry tomato resources in Guizhou Province

doi:10.3969/j.issn.1004-1524.2022.02.12

Acta Agriculturae Zhejiangensis ›› 2022, Vol. 34 ›› Issue (2): 310-316.DOI: 10.3969/j.issn.1004-1524.2022.02.12

• Horticultural Science • Previous Articles Next Articles

Genetic diversity analysis of 151 cherry tomato resources in Guizhou Province

PEI Yun¹^,²(), XU Xiuhong¹^,², LU Jinbiao¹, CHEN Amin¹, ZHANG Wanping¹^,^*()

1. College of Agriculture, Guizhou University, Guiyang 550025, China
2. Institute of Vegetable Research, Guizhou University, Guiyang 550025, China

Received:2020-09-15 Online:2022-02-25 Published:2022-03-02
Contact: ZHANG Wanping

Abstract

Abstract:

In this study, agronomic traits (13 quality traits and 11 quantitative traits) of 151 local cherry tomato resources in Guizhou were evaluated by variation level, genetic diversity, principal component analysis and cluster analysis. The results showed that genetic diversity index of the quality traits was lower than quantitative traits, among the quality traits, Shannon-Wiener diversity index of leaf color was the highest.The highest quantitative trait was the longitudinal diameter of the fruit, the coefficient of variation of ventricular number was the highest (32.47%). The relationships between different traits were complex, the accumulative contribution rate of the first 7 main inflorescence types, fruit number of single inflorescence, stalk length, fruit longitudinal diameter, fruit transverse diameter, fruit mass and leaf width was 67.633%, which included most of the information of all indexes. Based on phenotypic traits, 151 resources were divided into 9 groups at a genetic distance of 3.0 by systematic cluster intergroup polymerization. The first group contained 36 resources, which were mainly characterized by round fruit, early ripening and very early ripening. In group 8, No. 30 and No. 76 had strong growth ability and excellent performance; group 9 contained 17 resources, which were characterized by low single fruit weight and medium and late maturity.

Key words: cherry tomato, agronomic traits, genetic diversity analysis, principal component analysis, cluster analysis

CLC Number:

S641.2

PEI Yun, XU Xiuhong, LU Jinbiao, CHEN Amin, ZHANG Wanping. Genetic diversity analysis of 151 cherry tomato resources in Guizhou Province[J]. Acta Agriculturae Zhejiangensis, 2022, 34(2): 310-316.

Figures/Tables 4

References 16

[1]	邵宇, 张万萍, 朱守亮. 贵州省番茄优势区域发展思考[J]. 耕作与栽培, 2014(6):45-47.
	SHAO Y, ZHANG W P, ZHU S L. Thinking of tomato development in advantageous areas of Guizhou Province[J]. Tillage and Cultivation, 2014(6):45-47.(in Chinese with English abstract)
[2]	袁欣捷, 方荣, 周坤华, 等. 辣椒重要农艺性状关联分析与优异等位变异发掘[J]. 核农学报, 2020, 34(12):2658-2672.
	YUAN X J, FANG R, ZHOU K H, et al. Association analysis of important agronomic traits in pepper (Capsicum annuum L.) and mining of elite alleles[J]. Journal of Nuclear Agricultural Sciences, 2020, 34(12):2658-2672.(in Chinese with English abstract)
[3]	张倩男, 王晓敏, 芮文婧, 等. 基于表型性状及抗病标记的番茄种质资源遗传多样性分析[J]. 西南农业学报, 2018, 31(1):14-21.
	ZHANG Q N, WANG X M, RUI W J, et al. Genetic diversity analysis of tomato germplasm resources based on phenotypic traits and disease resistance markers[J]. Southwest China Journal of Agricultural Sciences, 2018, 31(1):14-21.(in Chinese with English abstract)
[4]	时明芝, 宋会兴. 植物遗传多样性研究方法概述[J]. 世界林业研究, 2005, 18(5):29-33.
	SHI M Z, SONG H X. Genetic diversity and detective methods of plant[J]. World Forestry Research, 2005, 18(5):29-33.(in Chinese with English abstract)
[5]	李鸿雁, 李俊, 黄帆, 等. 内蒙古78份葱属野生种表型遗传多样性分析[J]. 植物遗传资源学报, 2017, 18(4):620-628.
	LI H Y, LI J, HUANG F, et al. Phenotypic diversity of 78 accessions of wild Allium species in Inner Mongolia[J]. Journal of Plant Genetic Resources, 2017, 18(4):620-628.(in Chinese with English abstract)
[6]	孙亚强. 酸枣种质资源遗传多样性分析及其核心种质的构建[D]. 阿拉尔: 塔里木大学, 2016.
	SUN Y Q. Genetic diversity analysis and core collection construction of Ziziphus jujuba var. spinosa(bunge) Hu ex H. F. chow[D]. Ala’er: Tarim University, 2016. (in Chinese with English abstract)
[7]	李军, 刘凤军. 樱桃番茄种质资源的果实及果穗性状遗传多样性[J]. 江苏农业科学, 2015, 43(12):180-183.
	LI J, LIU F J. Genetic diversity of fruit and ear traits in cherry tomato[J]. Jiangsu Agricultural Sciences, 2015, 43(12):180-183.(in Chinese)
[8]	郑戌翔. 番茄萼片性状及其多样性研究[D]. 杨凌: 西北农林科技大学, 2012.
	ZHENG X X. Study on sepal traits and diversity in tomato[D]. Yangling: Northwest A & F University, 2012. (in Chinese with English abstract)
[9]	袁东升, 王晓敏, 赵宇飞, 等. 100份番茄种质资源表型性状的遗传多样性分析[J]. 西北农业学报, 2019, 28(4):594-601.
	YUAN D S, WANG X M, ZHAO Y F, et al. Genetic diversity analysis of 100 tomato germplasm resources based on phenotypic traits[J]. Acta Agriculturae Boreali-Occidentalis Sinica, 2019, 28(4):594-601.(in Chinese with English abstract)
[10]	李锡香, 杜永臣, 冯兰, 等. 番茄种质资源描述规范和数据标准[M]. 北京: 中国农业出版社, 2006.
[11]	吴丽艳, 龚亚菊, 黎志彬, 等. 樱桃番茄种质资源果实相关性状的多元统计分析[J]. 西南农业学报, 2012, 25(5):1818-1822.
	WU L Y, GONG Y J, LI Z B, et al. Multivariate statistical analysis of fruit-related characters of cherry tomato germplasm resources[J]. Journal of Southwest Agricultural Sciences, 2012, 25(5): 1818-1822.(in Chinese with English abstract)
[12]	芮文婧. 基于表型性状与SNP标记的番茄种质资源遗传多样性分析[D]. 银川: 宁夏大学, 2018.
	RUI W J. Genetic diversity analysis of tomato (Solanum lycopersicum L.) germplasm resources based on morphological and SNP markers[D]. Yinchuan: Ningxia University, 2018. (in Chinese with English abstract)
[13]	李春侨, 周龙, 陆彪, 等. 天山樱桃种质资源表型多样性研究[J]. 西北农业学报, 2018, 27(1):91-97.
	LI C Q, ZHOU L, LU B, et al. Study on phenotypic diversity of Cerasus tianschanica Pojark germplasm resources[J]. Acta Agriculturae Boreali-Occidentalis Sinica, 2018, 27(1):91-97.(in Chinese with English abstract)
[14]	周蓉, 蒋芳玲, 梁梅, 等. 基于表型性状的番茄品种评价和遗传多样性分析[J]. 西北农业学报, 2012, 21(9):95-102.
	ZHOU R, JIANG F L, LIANG M, et al. Evaluation and genetic diversity of tomato varieties based on phenotypic traits[J]. Acta Agriculturae Boreali-Occidentalis Sinica, 2012, 21(9):95-102.(in Chinese with English abstract)
[15]	芮文婧, 王晓敏, 张倩男, 等. 番茄353份种质资源表型性状遗传多样性分析[J]. 园艺学报, 2018, 45(3):561-570.
	RUI W J, WANG X M, ZHANG Q N, et al. Genetic diversity analysis of 353 tomato germplasm resources by phenotypic traits[J]. Acta Horticulturae Sinica, 2018, 45(3):561-570.(in Chinese with English abstract)
[16]	张倩男. 基于表型性状及SSR、SNP标记的樱桃番茄种质资源遗传多样性分析[D]. 银川:宁夏大学, 2018.
	ZHANG Q N. Genetic diversity of cherry tomato germplasm resources based on phenotypic traits and SSR, SNP markers[D]. Yinchuan: Ningxia University, 2018.(in Chinese with English abstract)

性状 Trait	H'	分布频率Distribution frequency
性状 Trait	H'	1	2	3	4	5	6	7	8
叶片颜色Leaf color	1.06	0.05	0.12	0.25	0.58
株型Plant type	0.34	0.89	0.11
生长习性Growth habit	0.12	0.97	0.03
花梗离层Abscission layer	0.39	0.87	0.13
熟性 Maturities	0.85	0.01	0.13	0.67	0.12
叶片类型Leaf type	0.63	0.78	0.01	0.01	0.25
叶片形状Leaf shape	0.45	0.17	0.83
成熟果色Color of matured fruit	0.58		0.01	0.02			0.11	0.84	0.02
萼片形状Sepalshape	0.74	0.33	0.65	0.01	0.01
花序类型 Inflorescence type	0.36	0.01	0.89	0.1
叶片着生状态 Leaf state	0.81	0.54	0.42	0.03
裂果性Fruit cracking	0.17	0.04	0.96
花柱长度Style length	0.72	0.62	0.36	0.01

性状 Trait	H'	分布频率Distribution frequency
性状 Trait	H'	1	2	3	4	5	6	7	8
叶片颜色Leaf color	1.06	0.05	0.12	0.25	0.58
株型Plant type	0.34	0.89	0.11
生长习性Growth habit	0.12	0.97	0.03
花梗离层Abscission layer	0.39	0.87	0.13
熟性 Maturities	0.85	0.01	0.13	0.67	0.12
叶片类型Leaf type	0.63	0.78	0.01	0.01	0.25
叶片形状Leaf shape	0.45	0.17	0.83
成熟果色Color of matured fruit	0.58		0.01	0.02			0.11	0.84	0.02
萼片形状Sepalshape	0.74	0.33	0.65	0.01	0.01
花序类型 Inflorescence type	0.36	0.01	0.89	0.1
叶片着生状态 Leaf state	0.81	0.54	0.42	0.03
裂果性Fruit cracking	0.17	0.04	0.96
花柱长度Style length	0.72	0.62	0.36	0.01

性状 Character	H'	均值 Mean	标准差 Standard deviation	变异系数 Coefficient of variation/%	最大值 Maximum	最小值 Minimum
单花序果数Number of fruit per inflorescence	1.64	8.43	0.83	25.43	11.75	7.82
果柄长度 Pedicel length/cm	1.85	9.73	2.45	23.75	18.54	6.73
果实纵径Longitudinal diameter of fruit/cm	2.45	3.21	1.30	25.89	9.10	1.42
果实横径Transverse diameter of fruit/cm	2.37	3.65	1.70	19.42	8.47	1.30
单果质量Weight per fruit/g	1.75	9.54	1.83	21.03	48.50	5.25
心室数Number of locules	2.43	2.52	1.79	32.47	18.00	2.00
叶长Leaf length/cm	2.28	33.74	5.87	18.45	44.75	16.83
叶宽Leaf width/cm	2.31	26.25	5.63	19.36	37.58	13.56
第一花序结位First inflorescence	2.38	6.18	0.84	25.37	8.75	4.25
第二花序结位Second inflorescence	2.28	9.81	0.86	25.75	12.50	7.25
果梗洼大小Size of cordy area around pedicel scar/cm	1.65	0.95	0.22	19.85	1.92	0.63

性状 Character	H'	均值 Mean	标准差 Standard deviation	变异系数 Coefficient of variation/%	最大值 Maximum	最小值 Minimum
单花序果数Number of fruit per inflorescence	1.64	8.43	0.83	25.43	11.75	7.82
果柄长度 Pedicel length/cm	1.85	9.73	2.45	23.75	18.54	6.73
果实纵径Longitudinal diameter of fruit/cm	2.45	3.21	1.30	25.89	9.10	1.42
果实横径Transverse diameter of fruit/cm	2.37	3.65	1.70	19.42	8.47	1.30
单果质量Weight per fruit/g	1.75	9.54	1.83	21.03	48.50	5.25
心室数Number of locules	2.43	2.52	1.79	32.47	18.00	2.00
叶长Leaf length/cm	2.28	33.74	5.87	18.45	44.75	16.83
叶宽Leaf width/cm	2.31	26.25	5.63	19.36	37.58	13.56
第一花序结位First inflorescence	2.38	6.18	0.84	25.37	8.75	4.25
第二花序结位Second inflorescence	2.28	9.81	0.86	25.75	12.50	7.25
果梗洼大小Size of cordy area around pedicel scar/cm	1.65	0.95	0.22	19.85	1.92	0.63

农艺性状 Agronomic traits	主成分Principal component
农艺性状 Agronomic traits	1	2	3	4	5	6	7
花序类型Inflorescence type	0.032	0.066	0.328	-0.512	0.396	0.061	-0.371
单花序果数Number of fruit per inflorescence	0.001	-0.791	-0.189	-0.029	-0.013	0.064	0.041
果柄长度Pedicel length/cm	-0.028	-0.191	0.52	0.421	0.218	0.369	0.016
果实纵径Longitudinal diameter of fruit/cm	0.004	0.046	-0.394	0.382	0.511	0.026	0.284
果实横径Transverse diameter of fruit/cm	-0.099	0.049	-0.331	-0.46	0.254	0.498	0.202
单果质量Weight per fruit/g	-0.088	-0.006	0.718	0.136	-0.012	0.034	-0.056
叶宽Leaf width/cm	0.091	-0.367	0.342	0.019	0.182	-0.168	0.603
第一花序结位First inflorescence	-0.024	0.383	0.050	-0.337	0.405	-0.098	0.210
第二花序结位Second inflorescence	0.006	0.690	0.269	0.025	0.106	-0.217	0.085
果梗洼大小Size of cordy area around pedicelscar/cm	0.078	0.433	-0.016	0.209	-0.240	-0.019	0.402
株型Plant type	0.823	0.036	0.072	0.095	0.028	-0.042	-0.112
生长习性Growth habit	0.879	0.010	0.062	0.023	0.052	0.07	-0.041
花梗离层Abscission layer	0.891	0.015	-0.104	-0.001	0.062	0.072	0.061
熟性Maturities	0.879	-0.020	-0.056	-0.049	0.027	0.009	-0.023
叶片类型Leaf type	0.895	-0.018	0.025	-0.05	-0.001	0.008	-0.028
叶片形状Leaf shape	0.668	0.256	-0.082	-0.075	-0.032	-0.097	0.052
成熟果色Color of matured fruit	0.860	-0.069	0.009	0.022	-0.044	0.047	0.048
萼片形状Sepalshape	0.876	-0.029	0.060	0.033	-0.086	-0.079	-0.024
叶片着生状态Leaf state	0.865	-0.038	-0.076	-0.027	-0.022	0.007	0.056
裂果性Fruit cracking	0.908	-0.037	0.006	0.004	-0.007	-0.003	-0.076
特征值Eigen value	7.427	1.900	1.579	1.335	1.165	1.123	1.027
贡献率Contribution/%	32.295	8.259	6.867	5.805	5.065	4.882	4.465
累积贡献率Cumulative percentage/%	32.295	40.549	47.416	53.221	58.286	63.168	67.633

Genetic diversity analysis of 151 cherry tomato resources in Guizhou Province

RichHTML

PDF (PC)

Knowledge

Abstract

Cite this article

share this article

Figures/Tables 4

References 16

Related Articles 15

Recommended Articles

Metrics

Comments

[1]	XU Weimeng, XU Yan, CHEN Guoli. Comprehensive evaluation of waxy corn quality based on various analytical methods [J]. Acta Agriculturae Zhejiangensis, 2025, 37(9): 1840-1848.
[2]	LIU Guomin, ZHENG Xu, LIAO Yujiao, QIN Yexin, QIN Weizhi. Effect of grafting on cold resistance of potato seedlings under low temperature stress [J]. Acta Agriculturae Zhejiangensis, 2025, 37(8): 1615-1623.
[3]	TAN Yali, GAO Mengxiang, LI Xiaojie, ZHOU Yingjie, XIONG Jian, ZENG Ziqi, LI Xiao, YANG Hua. Quality of mainly cultivated walnuts in Hubei Province of China at different harvest periods [J]. Acta Agriculturae Zhejiangensis, 2025, 37(7): 1459-1468.
[4]	JIANG Zhenlan, CHEN Fuxun, LUO Shuangfei, LUO Yeqin, SHA Jinming. Inversion of soil total iron content using random forest model based on multi-spectral transformation and principle compoment analysis [J]. Acta Agriculturae Zhejiangensis, 2025, 37(7): 1521-1532.
[5]	YUE Li, ZHUANG Hongmei, ZULIPIYA· Maimaiti, WANG Jiamin, MAO Hongyan, ZHANG Yingxian, NIGARY· Yadikar, YU Ming. Comprehensive evaluation of the texture quality of turnip succulent root based on principal component analysis and cluster analysis [J]. Acta Agriculturae Zhejiangensis, 2025, 37(5): 1057-1071.
[6]	LIU Sitong, HOU Yu, PAN Jiaquan, ZHOU Huanan, CUI Liang, WAN Bo, YU Tao. Physiological response of sweetpotato to the low temperature and evaluation of cold tolerance [J]. Acta Agriculturae Zhejiangensis, 2025, 37(4): 767-778.
[7]	TAN Jingru, HU Qizan, YUE Zhichen, TAO Peng, LEI Juanli, LI Biyuan, ZHAO Yanting, ZANG Yunxiang. Comprehensive evaluation system for heat tolerance of seedling-edible Chinese cabbage (Brassica rapa L. ssp.) based on chlorophyll fluorescence parameters [J]. Acta Agriculturae Zhejiangensis, 2025, 37(2): 288-299.
[8]	GUO Saisai, NIE Zhixing, FU Hongfei, WANG Tonglin, SHAO Zhiyong, WANG Hong, ZHENG Jirong. Phenotypic characters and SRAP genetic diversity analysis of 37 pepper germplasm resources [J]. Acta Agriculturae Zhejiangensis, 2025, 37(2): 300-310.
[9]	PAN Zhihong, WEN Xueting, YANG Hua, LYU Wentao, ZHANG Junjie, XIAO Yingping. Study on developmental changes of amino acid spectrum in Muscovy duck muscle [J]. Acta Agriculturae Zhejiangensis, 2024, 36(9): 2010-2019.
[10]	DONG Lili, XU Zhihao, YAN Canlong, FAN Xiaoping, JIN Zelan, WANG Zhonghua. Molecular identification and genetic relationship of different breeding populations in Fritillaria thunbergii based on phenotype and molecular markers [J]. Acta Agriculturae Zhejiangensis, 2024, 36(8): 1719-1730.
[11]	LI Yadong, LUO Xiaobo, PENG Xiao, YANG Guangqian, JIN Yueyue, ZU Guidong, TIAN Huan, ZHANG Wanping. Development of SNP and InDel markers in radish and their association with phenotypic characters [J]. Acta Agriculturae Zhejiangensis, 2024, 36(5): 1055-1066.
[12]	XUE Xianbin, JIA Qiong, CHEN Zhengfeng, LI Ruiyuan, CHEN Qingfu, SHI Taoxiong. Comprehensive evaluation of agronomic characteristics of recombinant inbred lines of Tartary buckwheat based on principal component analysis [J]. Acta Agriculturae Zhejiangensis, 2024, 36(4): 748-759.
[13]	LI Xuelong, LI Chao, LI Yue, LIU Guoli, ZHANG Peng, ZHANG Min. Effects of different cultivation modes on agronomic characters and accumulation of active components of Ganoderma lucidum strains [J]. Acta Agriculturae Zhejiangensis, 2023, 35(9): 2045-2055.
[14]	YE Lei, ZHANG Bo, YANG Xuezhen, LI Xiaolin, ZHANG Xiaoping, TAN Wei. Feasibility of Auricularia cornea cultivation with bamboo sawdust instead of wood sawdust and comprehensive evaluation of quality [J]. Acta Agriculturae Zhejiangensis, 2023, 35(6): 1416-1426.
[15]	TAN Shuxia, ZHAO Taodi, YANG Hao, NING Kejun, LIU Li, HE Qingyuan, HUANG Shoucheng, SHU Yingjie. Effects of shading on agronomic characters, yield and nitrogen metabolism of 10 vegetable soybean varieties [J]. Acta Agriculturae Zhejiangensis, 2023, 35(4): 729-735.