Acta Agriculturae Zhejiangensis ›› 2022, Vol. 34 ›› Issue (8): 1591-1598.DOI: 10.3969/j.issn.1004-1524.2022.08.03
• Crop Science • Previous Articles Next Articles
LIANG Chenggang(
), WANG Yan*(
), GUAN Zhixiu, WEI Chunyu, DENG Jiao, HUANG Juan, MENG Ziye, SHI Taoxiong
Received:2021-03-17
Online:2022-08-25
Published:2022-08-26
Contact:
WANG Yan
CLC Number:
LIANG Chenggang, WANG Yan, GUAN Zhixiu, WEI Chunyu, DENG Jiao, HUANG Juan, MENG Ziye, SHI Taoxiong. Identification and bioinformatics analysis of sucrose transporter family FtSUCs in Tartary buckwheat[J]. Acta Agriculturae Zhejiangensis, 2022, 34(8): 1591-1598.
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URL: http://www.zjnyxb.cn/EN/10.3969/j.issn.1004-1524.2022.08.03
| 基因编号Gene ID | GSL/bp | MTSL/bp | AAL | RMW/u | TIP | AI | PHP | LC |
|---|---|---|---|---|---|---|---|---|
| FtPinG0000184200.01 | 7 109 | 1 818 | 605 | 65 140.75 | 5.96 | 97.01 | 0.318 | ER |
| FtPinG0000812400.01 | 3 802 | 549 | 182 | 19 782.90 | 4.32 | 105.05 | 0.663 | ER |
| FtPinG0002608200.01 | 2 259 | 831 | 276 | 30 076.65 | 8.43 | 111.63 | 0.625 | ER |
| FtPinG0009584000.01 | 1 436 | 1 038 | 345 | 38 316.55 | 8.7 | 109.34 | 0.651 | ER |
| FtPinG0001943900.01 | 2 486 | 447 | 148 | 16 503.56 | 11.62 | 60.54 | 0.751 | CN |
| FtPinG0008441300.01 | 3 691 | 1 263 | 420 | 45 212.66 | 6.60 | 105.19 | 0.539 | ER |
| FtPinG0000342600.01 | 3 387 | 891 | 296 | 32 536.03 | 9.52 | 111.72 | 0.621 | ER |
| FtPinG0001943500.01 | 2 610 | 573 | 190 | 20 759.12 | 11.37 | 79.63 | -0.018 | CN |
| FtPinG0005577300.01 | 2 036 | 1 527 | 508 | 54 119.64 | 8.83 | 111.22 | 0.630 | ER |
| FtPinG0001944100.01 | 2 849 | 1 251 | 416 | 25 182.57 | 6.30 | 104.35 | 0.468 | ER |
Table 1 Gene sequence analysis of FtSUCs in Tartary buckwheat
| 基因编号Gene ID | GSL/bp | MTSL/bp | AAL | RMW/u | TIP | AI | PHP | LC |
|---|---|---|---|---|---|---|---|---|
| FtPinG0000184200.01 | 7 109 | 1 818 | 605 | 65 140.75 | 5.96 | 97.01 | 0.318 | ER |
| FtPinG0000812400.01 | 3 802 | 549 | 182 | 19 782.90 | 4.32 | 105.05 | 0.663 | ER |
| FtPinG0002608200.01 | 2 259 | 831 | 276 | 30 076.65 | 8.43 | 111.63 | 0.625 | ER |
| FtPinG0009584000.01 | 1 436 | 1 038 | 345 | 38 316.55 | 8.7 | 109.34 | 0.651 | ER |
| FtPinG0001943900.01 | 2 486 | 447 | 148 | 16 503.56 | 11.62 | 60.54 | 0.751 | CN |
| FtPinG0008441300.01 | 3 691 | 1 263 | 420 | 45 212.66 | 6.60 | 105.19 | 0.539 | ER |
| FtPinG0000342600.01 | 3 387 | 891 | 296 | 32 536.03 | 9.52 | 111.72 | 0.621 | ER |
| FtPinG0001943500.01 | 2 610 | 573 | 190 | 20 759.12 | 11.37 | 79.63 | -0.018 | CN |
| FtPinG0005577300.01 | 2 036 | 1 527 | 508 | 54 119.64 | 8.83 | 111.22 | 0.630 | ER |
| FtPinG0001944100.01 | 2 849 | 1 251 | 416 | 25 182.57 | 6.30 | 104.35 | 0.468 | ER |
| 基因编号 Gene ID | α-螺旋 α-helix/% | β-折叠 β-turn/% | 延长链 Extended strand/% | 无规则卷曲 Random coil/% | 跨膜域 Transmembrane domain |
|---|---|---|---|---|---|
| FtPinG0000184200.01 | 37.02 | 3.64 | 14.88 | 44.46 | 11 |
| FtPinG0000812400.01 | 48.35 | 4.40 | 16.48 | 30.77 | 3 |
| FtPinG0002608200.01 | 29.34 | 6.16 | 17.03 | 47.46 | 5 |
| FtPinG0009584000.01 | 54.05 | 2.60 | 12.72 | 30.64 | 8 |
| FtPinG0001943900.01 | 14.86 | 5.41 | 20.27 | 59.46 | 0 |
| FtPinG0008441300.01 | 50.00 | 2.86 | 15.24 | 31.90 | 10 |
| FtPinG0000342600.01 | 50.68 | 4.39 | 17.23 | 27.70 | 6 |
| FtPinG0001943500.01 | 32.11 | 5.26 | 15.79 | 46.84 | 2 |
| FtPinG0005577300.01 | 46.06 | 3.94 | 15.16 | 34.84 | 10 |
| FtPinG0001944100.01 | 53.91 | 4.35 | 13.04 | 28.70 | 10 |
Table 2 Protein structure of FtSUCs in Tartary buckwheat
| 基因编号 Gene ID | α-螺旋 α-helix/% | β-折叠 β-turn/% | 延长链 Extended strand/% | 无规则卷曲 Random coil/% | 跨膜域 Transmembrane domain |
|---|---|---|---|---|---|
| FtPinG0000184200.01 | 37.02 | 3.64 | 14.88 | 44.46 | 11 |
| FtPinG0000812400.01 | 48.35 | 4.40 | 16.48 | 30.77 | 3 |
| FtPinG0002608200.01 | 29.34 | 6.16 | 17.03 | 47.46 | 5 |
| FtPinG0009584000.01 | 54.05 | 2.60 | 12.72 | 30.64 | 8 |
| FtPinG0001943900.01 | 14.86 | 5.41 | 20.27 | 59.46 | 0 |
| FtPinG0008441300.01 | 50.00 | 2.86 | 15.24 | 31.90 | 10 |
| FtPinG0000342600.01 | 50.68 | 4.39 | 17.23 | 27.70 | 6 |
| FtPinG0001943500.01 | 32.11 | 5.26 | 15.79 | 46.84 | 2 |
| FtPinG0005577300.01 | 46.06 | 3.94 | 15.16 | 34.84 | 10 |
| FtPinG0001944100.01 | 53.91 | 4.35 | 13.04 | 28.70 | 10 |
Fig.3 Gene expression hotmap and DEGs expressing analysis of FtSUCs in Tartary buckwheat seedling Ⅰ, 5 d after emergence; Ⅱ, 10 d after emergence; Ⅲ, 15 d after emergence.
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