Research progress in gene cloning and molecular mechanism of rice lethal mutants

doi:10.3969/j.issn.1004-1524.2023.05.26

Acta Agriculturae Zhejiangensis ›› 2023, Vol. 35 ›› Issue (5): 1223-1234.DOI: 10.3969/j.issn.1004-1524.2023.05.26

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Research progress in gene cloning and molecular mechanism of rice lethal mutants

XIA Xiaodong¹^,²(), ZHANG Xiaobo², SHI Yongfeng², XU Rugen¹^,^*()

1. College of Agriculture, Yangzhou University, Yangzhou 225009, Jiangsu, China
2. China National Rice Research Institute, Hangzhou 311401, China

Received:2022-06-13 Online:2023-05-25 Published:2023-06-01

Abstract

Abstract:

Rice lethal mutants mainly include leaf-color mutants and early senescence mutants. The cloning and functional analysis of related genes of these two mutants are of great significance for the analysis of rice lethal albinism and early senescence, they are mainly involved in the synthesis and degradation of photosynthetic pigments, chloroplast-related pathways, protein synthesis and degradation, hormone pathways, programmed cell death and transcription factor pathways. In this work, the cloning and molecular mechanism of rice lethal mutation genes were summarized, and their breeding value was analyzed. On the basis of elucidating the mechanism behind rice senescence regulation, the strategies of its molecular and cultivation regulation practices should be designed to explore its breeding potential.

Key words: rice, lethal mutants, albino leaf, early senescence, gene, chloroplast, protein

CLC Number:

S511

XIA Xiaodong, ZHANG Xiaobo, SHI Yongfeng, XU Rugen. Research progress in gene cloning and molecular mechanism of rice lethal mutants[J]. Acta Agriculturae Zhejiangensis, 2023, 35(5): 1223-1234.

Figures/Tables 3

References 64

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基因 Gene	染色体 Chromosome	基因功能 Gene function	参考文献 Reference
ALS3	1	PPR蛋白PPR protein	[2]
OsCAF1	1	叶绿体 RNA剪切因子Chloroplast RNA splicing factor	[3]
ASL2	2	叶绿体50S核糖体蛋白 L21 Chloroplast 50S ribosomal protein L21	[4]
OspTAC2	3	PPR蛋白PPR protein	[5]
LAS1	3	HMBPP还原酶 HMBPP reductase	[6]
ASL4	3	30S核糖体蛋白S1 30S ribosomal protein S1	[7]
OsPPR6	5	编码PPR蛋白,参与叶绿体RNA编辑与剪切	[8]
		Encoding PPR protein and participates in editing and splicing of chloroplast RNA
RA1	6	甘氨酰 tRNA合成酶Glycyl-tRNA synthetase	[9]
OsBE1	6	糖苷水解酶 13家族蛋白Glycoside hydrolase 13 family proteins	[10]
ALE1	7	ζ-胡萝卜素脱氢酶ζ-Carotene dehydrogenase	[11]
OsPPR1	9	PPR蛋白PPR protein	[12]
WSL3	10	质体RNA聚合酶的非核心亚基Non core subunit of plastid RNA polymerase	[13]
CFM3	11	叶绿体基因剪切因子Chloroplast gene splicing factor	[3]

基因 Gene	染色体 Chromosome	基因功能 Gene function	参考文献 Reference
ALS3	1	PPR蛋白PPR protein	[2]
OsCAF1	1	叶绿体 RNA剪切因子Chloroplast RNA splicing factor	[3]
ASL2	2	叶绿体50S核糖体蛋白 L21 Chloroplast 50S ribosomal protein L21	[4]
OspTAC2	3	PPR蛋白PPR protein	[5]
LAS1	3	HMBPP还原酶 HMBPP reductase	[6]
ASL4	3	30S核糖体蛋白S1 30S ribosomal protein S1	[7]
OsPPR6	5	编码PPR蛋白,参与叶绿体RNA编辑与剪切	[8]
		Encoding PPR protein and participates in editing and splicing of chloroplast RNA
RA1	6	甘氨酰 tRNA合成酶Glycyl-tRNA synthetase	[9]
OsBE1	6	糖苷水解酶 13家族蛋白Glycoside hydrolase 13 family proteins	[10]
ALE1	7	ζ-胡萝卜素脱氢酶ζ-Carotene dehydrogenase	[11]
OsPPR1	9	PPR蛋白PPR protein	[12]
WSL3	10	质体RNA聚合酶的非核心亚基Non core subunit of plastid RNA polymerase	[13]
CFM3	11	叶绿体基因剪切因子Chloroplast gene splicing factor	[3]

基因名称 Gene name	染色体 Chromosome	可能的功能 Possible function	参考文献 Reference
Oslms	2	双链RNA结合蛋白Double stranded RNA binding protein	[35]
Ospse1	1	果胶分解酶 Pectolytic enzyme	[36]
PSL2/PLS2/psl2	3	糖基转移酶Glycosyltransferase	[25,37 -38]
ZS	12	叶绿素合成及质体的发育Chlorophyll synthesis and plastid development	[40]
YPD1	6	类LRR蛋白LRR like protein	[41]
SPL29	8	UDP-N-乙酰基葡萄糖焦磷酸化酶UDP-N-acetylglucose pyrophosphorylase	[39]
GnT1	2	N-乙酰葡糖氨基转移酶N-acetylglucosamine transferase	[42]
OsSAG12-1	1	半胱氨酸蛋白酶前体Cysteine protease precursor	[43]
Osh69	8	碱性α-半乳糖苷酶Alkalinity α-Galactosidase	[44]
OsCDC48	3	编码AAA型ATP酶Encoding AAA type ATPase	[45-46]
RLS3	3	编码AAA⁺结构域DNA结合蛋白DNA binding protein encoding AAA⁺ domain	[47]
SL	12	细胞色素P450单加氧酶家族CYP71P1蛋白	[48]
		Alkaline cytochrome P450 monooxygenase family CYP71P1 protein
PSLS1	7	谷氨酸合成酶Glutamate synthetase	[58]
OsHox33	—	Ⅲ类同源域亮氨酸拉链 Class III homeodomain leucine zippe	[50]
SPL28	1	网格型衔接蛋白复合物 1的中间亚基 μ1	[51]
		Intermediate subunits of cladding adaptor protein complex μ 1
RLS1	2	NB结合蛋白 NB binding protein	[52]
OsNAP	—	NAC家族的转录因子 Transcription factors of NAC family	[56]
OsLED	3	类锌指蛋白LSD1 Zinc finger like protein LSD1	[59]
OsCATC	3	过氧化氢酶基因Catalase gene	[60]
OsPLS1	6	编码空泡型H-ATP 酶亚基Encoding vacuolar H-ATPase subunit	[57]
SMS1	8	—	[24]
LTS1	3	—	[32]
WL4	3	—	[34]
LAD	11	—	[26]
es5	5	—	[28]
g398	5	—	[28]
MPS1	6	—	[27]
OsLES	6	—	[29]
lmes1	7	—	[30]
LMES2	10	—	[31]
Oswss1	11	—	[33]

基因名称 Gene name	染色体 Chromosome	可能的功能 Possible function	参考文献 Reference
Oslms	2	双链RNA结合蛋白Double stranded RNA binding protein	[35]
Ospse1	1	果胶分解酶 Pectolytic enzyme	[36]
PSL2/PLS2/psl2	3	糖基转移酶Glycosyltransferase	[25,37 -38]
ZS	12	叶绿素合成及质体的发育Chlorophyll synthesis and plastid development	[40]
YPD1	6	类LRR蛋白LRR like protein	[41]
SPL29	8	UDP-N-乙酰基葡萄糖焦磷酸化酶UDP-N-acetylglucose pyrophosphorylase	[39]
GnT1	2	N-乙酰葡糖氨基转移酶N-acetylglucosamine transferase	[42]
OsSAG12-1	1	半胱氨酸蛋白酶前体Cysteine protease precursor	[43]
Osh69	8	碱性α-半乳糖苷酶Alkalinity α-Galactosidase	[44]
OsCDC48	3	编码AAA型ATP酶Encoding AAA type ATPase	[45-46]
RLS3	3	编码AAA⁺结构域DNA结合蛋白DNA binding protein encoding AAA⁺ domain	[47]
SL	12	细胞色素P450单加氧酶家族CYP71P1蛋白	[48]
		Alkaline cytochrome P450 monooxygenase family CYP71P1 protein
PSLS1	7	谷氨酸合成酶Glutamate synthetase	[58]
OsHox33	—	Ⅲ类同源域亮氨酸拉链 Class III homeodomain leucine zippe	[50]
SPL28	1	网格型衔接蛋白复合物 1的中间亚基 μ1	[51]
		Intermediate subunits of cladding adaptor protein complex μ 1
RLS1	2	NB结合蛋白 NB binding protein	[52]
OsNAP	—	NAC家族的转录因子 Transcription factors of NAC family	[56]
OsLED	3	类锌指蛋白LSD1 Zinc finger like protein LSD1	[59]
OsCATC	3	过氧化氢酶基因Catalase gene	[60]
OsPLS1	6	编码空泡型H-ATP 酶亚基Encoding vacuolar H-ATPase subunit	[57]
SMS1	8	—	[24]
LTS1	3	—	[32]
WL4	3	—	[34]
LAD	11	—	[26]
es5	5	—	[28]
g398	5	—	[28]
MPS1	6	—	[27]
OsLES	6	—	[29]
lmes1	7	—	[30]
LMES2	10	—	[31]
Oswss1	11	—	[33]

Research progress in gene cloning and molecular mechanism of rice lethal mutants

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