浙江农业学报 ›› 2022, Vol. 34 ›› Issue (12): 2622-2628.DOI: 10.3969/j.issn.1004-1524.2022.12.05
牛病毒性腹泻病毒全球基因型与亚型流行情况
谌婕1(
), 左之才1, 才冬杰1,*(), 付星鑫1, 刘玲利1, 张义琳1,2, 苟丽萍1, 王娅1, 任志华1, 邓俊良1
- 1.四川农业大学 动物医学院,动物疫病与人类健康四川省重点实验室,四川 成都 611134
2.罗平县农业农村局动物疫病预防控制中心,云南 曲靖 655800
-
收稿日期:2022-03-14出版日期:2022-12-25发布日期:2022-12-26 -
作者简介:*才冬杰,E-mail:18811782766@163.com
谌婕(1998—),女,四川隆昌人,硕士研究生,主要从事人畜共患病的研究。E-mail: 634740980@qq.com -
通讯作者:才冬杰 -
基金资助:国家现代农业产业技术体系(肉牛牦牛);国家现代农业产业技术体系(CARS-37);国家现代农业产业技术体系四川肉牛创新团队项目(SCCXTD-2020-13)
Global genotype and subgenotype prevalence of bovine viral diarrhea virus
CHEN Jie1(), ZUO Zhicai1, CAI Dongjie1,*(), FU Xingxin1, LIU Lingli1, ZHANG Yilin1,2, GOU Liping1, WANG Ya1, REN Zhihua1, DENG Junliang1
- 1. Sichuan Provincial Key Laboratory of Animal Diseases and Human Health, College of Veterinary Medicine, Sichuan Agricultural University, Chengdu 611134, China
2. Animal Disease Prevention and Control Center of Agricultural and Rural Bureau of Luoping County, Qujing 655800, Yunnan, China
-
Received:2022-03-14Online:2022-12-25Published:2022-12-26 -
Contact:CAI Dongjie
摘要：
牛病毒性腹泻病毒(Bovine viral diarrhea virus,BVDV)在全球流行率较高的基因亚型是BVDV-1b,其次是1a和2a;基因亚型1t和1n的全球流行率较低,1v亚型是近年新流行的基因亚型。BVDV新基因亚型的逐年出现说明其在不断地发生遗传变异,致其防控愈发困难。欧洲国家流行的BVDV基因亚型种类最多,说明BVDV在欧洲具有更高的遗传多样性。在亚洲发现的BVDV毒株数量则明显多于其他洲,1b是亚洲流行率最高的基因亚型。BVDV-3型在欧洲被报道次数最多,在亚洲也被报道过。本文对世界范围内BVDV的流行情况进行综述,可以丰富BVDV分子流行病学数据,也可为BVDV防控提供一定的理论基础。
中图分类号:
引用本文
谌婕, 左之才, 才冬杰, 付星鑫, 刘玲利, 张义琳, 苟丽萍, 王娅, 任志华, 邓俊良. 牛病毒性腹泻病毒全球基因型与亚型流行情况[J]. 浙江农业学报, 2022, 34(12): 2622-2628.
CHEN Jie, ZUO Zhicai, CAI Dongjie, FU Xingxin, LIU Lingli, ZHANG Yilin, GOU Liping, WANG Ya, REN Zhihua, DENG Junliang. Global genotype and subgenotype prevalence of bovine viral diarrhea virus[J]. Acta Agriculturae Zhejiangensis, 2022, 34(12): 2622-2628.
图1 BVDV基因组结构示意图
Fig.1 Schematic representation of the genomic structure of BVDV
图1 BVDV基因组结构示意图
Fig.1 Schematic representation of the genomic structure of BVDV
表1 BVDV在美洲、澳洲、非洲和欧洲的基因亚型分布
Table 1 Subgenotype distribution of BVDV in America, Australia, Africa and Europe
| 国家 Country | 基因区域 Genomic region | 分离年份 Year of isolation | BVDV-1 | BVDV-2 | BVDV-3 | 文献 Reference | ||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a | b | c | d | e | f | g | h | i | j | k | l | m | n | o | p | q | r | s | t | u | v | ? | a | b | c | d | ? | |||||
| 阿根廷Argentina | 5'UTR, Npro, E2 | 1984—2020 | 50 | 125 | — | — | 1 | — | — | — | 1 | 4 | — | — | — | — | — | — | — | — | — | — | — | — | 2 | 6 | 13 | 1 | 1 | — | 4 | [ |
| 巴西Brazil | 5'UTR, Npro, E2 | 1993—2021 | 60 | 29 | — | 30 | 1 | — | — | — | 1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 46 | 2 | — | 3 | 9 | [ |
| 加拿大Canada | 5'UTR | 1990—2007 | 1 | 2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3 | — | — | — | — | — | [ |
| 埃及Egypt | 5'UTR, Npro | 1994—2015 | — | 7 | — | — | — | — | — | — | — | 1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | [ |
| 南非South Africa | 5'UTR | 1990—2016 | 35 | 18 | 20 | 20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20 | — | — | — | — | — | — | [ |
| 美国USA | 5'UTR, Npro, E2 | 1980—2020 | 205 | 675 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3 | 121 | — | — | — | 9 | 3 | [ |
| 澳大利亚Australia | 5'UTR, Npro | 1985—2020 | 13 | 1 | 445 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4 | — | — | — | — | 3 | [ |
| 乌拉圭Uruguay | 5'UTR, Npro | 2014—2018 | 49 | — | — | — | — | — | — | — | 2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10 | — | — | — | — | [ |
| 奥地利Austria | 5'UTR, Npro | 1997—2014 | 4 | 134 | — | 34 | 16 | 218 | 11 | 222 | — | — | 4 | — | — | — | — | — | — | — | — | — | — | — | — | 1 | 1 | — | — | — | 3 | [ |
| 法国France | 5'UTR, Npro | 1993—2005 | 3 | 15 | — | 3 | 46 | — | — | — | — | — | — | 3* | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | [ |
| 德国Germany | 5'UTR, E2 | 1960—2014 | 1 | 31 | — | 24 | 24 | 65 | 3 | 17 | — | — | 1 | — | — | — | — | — | — | — | — | — | — | — | — | — | 11 | — | 16 | — | — | [ |
| 爱尔兰Ireland | 5'UTR, Npro | 1968—2014 | 428 | 19 | — | 1 | 1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12 | — | 1 | [ |
| 意大利Italy | 5'UTR | 1966—2017 | 16 | 193 | 2 | 27 | 141 | 55 | 8 | 20 | — | — | 3 | 1* | — | — | — | — | — | 2* | 1 | 1 | 2 | — | — | 8 | 10 | — | — | — | — | [ |
| 西班牙Spain | 5'UTR, Npro | 1989—2018 | 3 | 162 | 2 | 9 | 8 | 2 | — | 2 | — | — | 1 | 1 | — | — | — | — | — | — | — | — | — | — | — | — | 2 | 9 | — | — | 17 | [ |
| 土耳其Turkey | 5'UTR, Npro, E2 | 1997—2021 | 10 | 12 | 1 | 9 | — | 21 | — | 1 | 1 | — | — | 54* | — | — | — | — | — | 3* | — | — | — | — | 20 | 7 | 7 | 1 | — | — | — | [ |
| 英国UK | 5'UTR, Npro | 1966—2012 | 390 | 65 | — | 2 | 5 | 1 | — | — | 23 | 1 | — | — | — | — | — | — | — | — | — | — | — | — | — | 3 | 7 | — | — | — | 1 | [ |
| 波兰Poland | 5'UTR, Npro | 2004—2019 | — | 48 | — | 30 | 1 | 23 | 19 | — | — | — | — | — | — | — | — | — | — | 4 | 3 | — | — | — | — | — | 4 | — | — | — | — | [ |
| 斯洛文尼亚Slovenia | 5'UTR, Npro | 1997—2006 | 1 | 5 | — | 24 | 1 | 28 | 1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | [ |
| 芬兰Finland | 5'UTR, Npro | 1993—2004 | — | — | — | 5 | — | 1 | — | — | — | 2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | [ |
表1 BVDV在美洲、澳洲、非洲和欧洲的基因亚型分布
Table 1 Subgenotype distribution of BVDV in America, Australia, Africa and Europe
| 国家 Country | 基因区域 Genomic region | 分离年份 Year of isolation | BVDV-1 | BVDV-2 | BVDV-3 | 文献 Reference | ||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a | b | c | d | e | f | g | h | i | j | k | l | m | n | o | p | q | r | s | t | u | v | ? | a | b | c | d | ? | |||||
| 阿根廷Argentina | 5'UTR, Npro, E2 | 1984—2020 | 50 | 125 | — | — | 1 | — | — | — | 1 | 4 | — | — | — | — | — | — | — | — | — | — | — | — | 2 | 6 | 13 | 1 | 1 | — | 4 | [ |
| 巴西Brazil | 5'UTR, Npro, E2 | 1993—2021 | 60 | 29 | — | 30 | 1 | — | — | — | 1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 46 | 2 | — | 3 | 9 | [ |
| 加拿大Canada | 5'UTR | 1990—2007 | 1 | 2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3 | — | — | — | — | — | [ |
| 埃及Egypt | 5'UTR, Npro | 1994—2015 | — | 7 | — | — | — | — | — | — | — | 1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | [ |
| 南非South Africa | 5'UTR | 1990—2016 | 35 | 18 | 20 | 20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20 | — | — | — | — | — | — | [ |
| 美国USA | 5'UTR, Npro, E2 | 1980—2020 | 205 | 675 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3 | 121 | — | — | — | 9 | 3 | [ |
| 澳大利亚Australia | 5'UTR, Npro | 1985—2020 | 13 | 1 | 445 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4 | — | — | — | — | 3 | [ |
| 乌拉圭Uruguay | 5'UTR, Npro | 2014—2018 | 49 | — | — | — | — | — | — | — | 2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10 | — | — | — | — | [ |
| 奥地利Austria | 5'UTR, Npro | 1997—2014 | 4 | 134 | — | 34 | 16 | 218 | 11 | 222 | — | — | 4 | — | — | — | — | — | — | — | — | — | — | — | — | 1 | 1 | — | — | — | 3 | [ |
| 法国France | 5'UTR, Npro | 1993—2005 | 3 | 15 | — | 3 | 46 | — | — | — | — | — | — | 3* | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | [ |
| 德国Germany | 5'UTR, E2 | 1960—2014 | 1 | 31 | — | 24 | 24 | 65 | 3 | 17 | — | — | 1 | — | — | — | — | — | — | — | — | — | — | — | — | — | 11 | — | 16 | — | — | [ |
| 爱尔兰Ireland | 5'UTR, Npro | 1968—2014 | 428 | 19 | — | 1 | 1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12 | — | 1 | [ |
| 意大利Italy | 5'UTR | 1966—2017 | 16 | 193 | 2 | 27 | 141 | 55 | 8 | 20 | — | — | 3 | 1* | — | — | — | — | — | 2* | 1 | 1 | 2 | — | — | 8 | 10 | — | — | — | — | [ |
| 西班牙Spain | 5'UTR, Npro | 1989—2018 | 3 | 162 | 2 | 9 | 8 | 2 | — | 2 | — | — | 1 | 1 | — | — | — | — | — | — | — | — | — | — | — | — | 2 | 9 | — | — | 17 | [ |
| 土耳其Turkey | 5'UTR, Npro, E2 | 1997—2021 | 10 | 12 | 1 | 9 | — | 21 | — | 1 | 1 | — | — | 54* | — | — | — | — | — | 3* | — | — | — | — | 20 | 7 | 7 | 1 | — | — | — | [ |
| 英国UK | 5'UTR, Npro | 1966—2012 | 390 | 65 | — | 2 | 5 | 1 | — | — | 23 | 1 | — | — | — | — | — | — | — | — | — | — | — | — | — | 3 | 7 | — | — | — | 1 | [ |
| 波兰Poland | 5'UTR, Npro | 2004—2019 | — | 48 | — | 30 | 1 | 23 | 19 | — | — | — | — | — | — | — | — | — | — | 4 | 3 | — | — | — | — | — | 4 | — | — | — | — | [ |
| 斯洛文尼亚Slovenia | 5'UTR, Npro | 1997—2006 | 1 | 5 | — | 24 | 1 | 28 | 1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | [ |
| 芬兰Finland | 5'UTR, Npro | 1993—2004 | — | — | — | 5 | — | 1 | — | — | — | 2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | [ |
表2 BVDV在亚洲的基因亚型分布
Table 2 Subgenotype distribution of BVDV in Asia
| 国家 Country | 基因区域 Genomic region | 分离年份 Year of isolation | BVDV-1 | BVDV-2 | BVDV-3 | 文献 Reference | ||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a | b | c | d | e | f | g | h | i | j | k | l | m | n | o | p | q | r | s | t | u | v | ? | a | b | c | d | ? | |||||
| 中国China | 5'UTR, Npro, E2 | 1988—2021 | 63 | 124 | 57 | 48 | — | 3 | — | — | 3 | — | — | — | 104 | — | 18 | — | 21 | — | — | — | 24 | 12 | 2 | — | 2 | 1 | — | — | 2 | [ |
| 印度India | 5'UTR, Npro | 2000—2018 | — | 24 | 6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8 | 6 | 1 | — | — | 19 | [ |
| 菲律宾Philippines | E2 | 未知Unknow | — | 3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | [ |
| 日本Japan | 5'UTR, Npro | 1975—2020 | 358 | 1517 | 340 | — | — | — | — | — | — | — | 4 | — | 1 | 2 | 2 | — | — | — | — | — | — | — | — | 2 | 789 | 2 | — | 5 | — | [ |
| 韩国Korea | 5'UTR | 1999—2018 | 21 | 62 | 3 | — | — | — | — | — | — | — | — | — | — | 1 | 1 | — | — | — | — | — | — | — | — | — | 29 | — | — | — | — | [ |
| 蒙古国Mongolia | 5'UTR | 2013—2014 | 4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5 | 4 | — | — | — | — | [ |
表2 BVDV在亚洲的基因亚型分布
Table 2 Subgenotype distribution of BVDV in Asia
| 国家 Country | 基因区域 Genomic region | 分离年份 Year of isolation | BVDV-1 | BVDV-2 | BVDV-3 | 文献 Reference | ||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a | b | c | d | e | f | g | h | i | j | k | l | m | n | o | p | q | r | s | t | u | v | ? | a | b | c | d | ? | |||||
| 中国China | 5'UTR, Npro, E2 | 1988—2021 | 63 | 124 | 57 | 48 | — | 3 | — | — | 3 | — | — | — | 104 | — | 18 | — | 21 | — | — | — | 24 | 12 | 2 | — | 2 | 1 | — | — | 2 | [ |
| 印度India | 5'UTR, Npro | 2000—2018 | — | 24 | 6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8 | 6 | 1 | — | — | 19 | [ |
| 菲律宾Philippines | E2 | 未知Unknow | — | 3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | [ |
| 日本Japan | 5'UTR, Npro | 1975—2020 | 358 | 1517 | 340 | — | — | — | — | — | — | — | 4 | — | 1 | 2 | 2 | — | — | — | — | — | — | — | — | 2 | 789 | 2 | — | 5 | — | [ |
| 韩国Korea | 5'UTR | 1999—2018 | 21 | 62 | 3 | — | — | — | — | — | — | — | — | — | — | 1 | 1 | — | — | — | — | — | — | — | — | — | 29 | — | — | — | — | [ |
| 蒙古国Mongolia | 5'UTR | 2013—2014 | 4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5 | 4 | — | — | — | — | [ |
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