Acta Agriculturae Zhejiangensis ›› 2021, Vol. 33 ›› Issue (10): 1982-1990.DOI: 10.3969/j.issn.1004-1524.2021.10.22
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TAN Xiaojing1,2(), WANG Zhonghua1, WU Yueyan1, ZHENG Ersong2, XU Rumeng2, CHEN Jianping2, WANG Xuming2,*(
), YAN Chengqi1,3,*(
)
Received:
2020-06-10
Online:
2021-10-25
Published:
2021-11-02
Contact:
WANG Xuming,YAN Chengqi
CLC Number:
TAN Xiaojing, WANG Zhonghua, WU Yueyan, ZHENG Ersong, XU Rumeng, CHEN Jianping, WANG Xuming, YAN Chengqi. Application progress of gene editing techniques in rice disease-resistant genes and breeding research[J]. Acta Agriculturae Zhejiangensis, 2021, 33(10): 1982-1990.
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[1] |
BIRLA D S, MALIK K, SAINGER M, et al. Progress and challenges in improving the nutritional quality of rice (Oryza sativa L.)[J]. Critical Reviews in Food Science and Nutrition, 2017, 57(11):2455-2481.
DOI URL |
[2] |
DENG Z H, QIN L, GAO Y, et al. From early domesticated rice of the middle Yangtze basin to millet, rice and wheat agriculture: archaeobotanical macro-remains from baligang, Nanyang basin, central China (6700-500 BC)[J]. PLoS One, 2015, 10(10):e0139885.
DOI URL |
[3] | 贾奎华, 韩志远. 水稻高产栽培技术及病虫害防治分析[J]. 农民致富之友, 2017(24):29. |
JIA K H, HAN Z Y. Analysis of high-yield cultivation technology of rice and prevention of diseases and insect pests[J]. Friends of Farmers, 2017(24):29.(in Chinese) | |
[4] | ABROL D P, SHANKAR U. Pesticides, food safety and integrated pest management[M]//PESHIN, RAJINDER. Integrated Pest Management. Dordrecht: Springer Netherlands, 2014: 167-199. |
[5] | MORTON J, DAVIS M W, JORGENSEN E M, et al. Induction and repair of zinc-finger nuclease-targeted double-strand breaks in Caenorhabditis elegans somatic cells[J]. Proceedings of the National Academy of Sciences of the United States of America, 2006, 103(44):16370-16375. |
[6] |
SUN N, ZHAO H M. Transcription activator-like effector nucleases (TALENs): a highly efficient and versatile tool for genome editing[J]. Biotechnology and Bioengineering, 2013, 110(7):1811-1821.
DOI URL |
[7] | 李希陶, 刘耀光. 基因组编辑技术在水稻功能基因组和遗传改良中的应用[J]. 生命科学, 2016, 28(10):1243-1249. |
LI X T, LIU Y G. Genome editing technology for functional genomics and genetic improvement in rice[J]. Chinese Bulletin of Life Sciences, 2016, 28(10):1243-1249.(in Chinese with English abstract) | |
[8] | 秦瑞英, 魏鹏程. Prime editing引导植物基因组精确编辑新局面[J]. 遗传, 2020, 42(6):519-523. |
QIN R Y, WEI P C. Prime editing creates a novel dimension of plant precise genome editing[J]. Hereditas, 2020, 42(6):519-523.(in Chinese with English abstract) | |
[9] | 朱玉昌, 郑小江, 胡一兵. 基因编辑技术的方法、原理及应用[J]. 生物医学, 2015, 5(3):32-41. |
ZHU Y C, ZHENG X J, HU Y B. Methods, principles and application of gene editing[J]. Hans Journal of Biomedicine, 2015, 5(3):32-41.(in Chinese)
DOI URL |
|
[10] |
MULLER H J. Artificial transmutation of the gene[J]. Science, 1927, 66(1699):84-87.
DOI URL |
[11] |
AUERBACH C, ROBSON J M, CARR J G. The chemical production of mutations[J]. Science, 1947, 105(2723):243-247.
DOI URL |
[12] | SCHERER S, DAVIS R W. Replacement of chromosome segments with altered DNA sequences constructed in vitro[J]. Proceedings of the National Academy of Sciences of the United States of America, 1979, 76(10):4951-4955. |
[13] | ROTHSTEIN R J. 12] One-step gene disruption in yeast[J]. Methods in Enzymology, 1983, 101:202-211. |
[14] |
SMITHIES O, GREGG R G, BOGGS S S, et al. Insertion of DNA sequences into the human chromosomal β-globin locus by homologous recombination[J]. Nature, 1985, 317(6034):230-234.
DOI URL |
[15] |
THOMAS K R, FOLGER K R, CAPECCHI M R. High frequency targeting of genes to specific sites in the mammalian genome[J]. Cell, 1986, 44(3):419-428.
DOI URL |
[16] |
ESVELT K M, WANG H H. Genome-scale engineering for systems and synthetic biology[J]. Molecular Systems Biology, 2013, 9(1):641.
DOI URL |
[17] | 肖安, 胡莹莹, 王唯晔, 等. 人工锌指核酸酶介导的基因组定点修饰技术[J]. 遗传, 2011, 33(7):3-21. |
XIAO A, HU Y Y, WANG W Y, et al. Progress in zinc finger nuclease engineering for targeted genome modification[J]. Hereditas, 2011, 33(7):3-21.(in Chinese with English abstract) | |
[18] |
CHEN K L, WANG Y P, ZHANG R, et al. CRISPR/cas genome editing and precision plant breeding in agriculture[J]. Annual Review of Plant Biology, 2019, 70:667-697.
DOI URL |
[19] |
KLUG A. The discovery of zinc fingers and their applications in gene regulation and genome manipulation[J]. Annual Review of Biochemistry, 2010, 79:213-231.
DOI URL |
[20] |
BILICHAK A, SASTRY-DENT L, SRIRAM S, et al. Genome editing in wheat microspores and haploid embryos mediated by delivery of ZFN proteins and cell-penetrating peptide complexes[J]. Plant Biotechnology Journal, 2020, 18(5):1307-1316.
DOI URL |
[21] |
RÖMER P, HAHN S, JORDAN T, et al. Plant pathogen recognition mediated by promoter activation of the pepper Bs3 resistance gene[J]. Science, 2007, 318(5850):645-648.
DOI URL |
[22] | 周金伟, 王灵慧, 申义君, 等. 类转录激活因子效应物核酸酶(TALENs)的构建及其在基因组定点修饰中的应用[J]. 中国细胞生物学学报, 2013, 35(11):1672-1680. |
ZHOU J W, WANG L H, SHEN Y J, et al. The construction of transcription activator-like effector nucleases(TALENs) and its application in the genome fixed-point modification[J]. Chinese Journal of Cell Biology, 2013, 35(11):1672-1680.(in Chinese with English abstract) | |
[23] |
ISHINO Y, SHINAGAWA H, MAKINO K, et al. Nucleotide sequence of the iap gene, responsible for alkaline phosphatase isozyme conversion in Escherichia coli, and identification of the gene product[J]. Journal of Bacteriology, 1987, 169(12):5429-5433.
DOI URL |
[24] |
MOJICA F J M, DÍEZ-VILLASEÑOR C, SORIA E, et al. Biological significance of a family of regularly spaced repeats in the genomes of Archaea, Bacteria and mitochondria[J]. Molecular Microbiology, 2000, 36(1):244-246.
DOI URL |
[25] |
GRISSA I, VERGNAUD G, POURCEL C. The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats[J]. BMC Bioinformatics, 2007, 8(1):1-10.
DOI URL |
[26] |
ZHANG Y X, MALZAHN A A, SRETENOVIC S, et al. The emerging and uncultivated potential of CRISPR technology in plant science[J]. Nature Plants, 2019, 5(8):778-794.
DOI URL |
[27] | 刘耀光, 李构思, 张雅玲, 等. CRISPR/Cas植物基因组编辑技术研究进展[J]. 华南农业大学学报, 2019, 40(5):38-49. |
LIU Y G, LI G S, ZHANG Y L, et al. Current advances on CRISPR/Cas genome editing technologies in plants[J]. Journal of South China Agricultural University, 2019, 40(5):38-49.(in Chinese with English abstract) | |
[28] | KHATODIA S, BHATOTIA K, PASSRICHA N, et al. The CRISPR/cas genome-editing tool: application in improvement of crops[J]. Frontiers in Plant Science, 2016, 7:506. |
[29] |
MIGLANI G S. Genome editing in crop improvement: present scenario and future prospects[J]. Journal of Crop Improvement, 2017, 31(4):453-559.
DOI URL |
[30] |
DOUDNA J A, CHARPENTIER E. The new frontier of genome engineering with CRISPR-Cas9[J]. Science, 2014, 346(6213):1258096.
DOI URL |
[31] |
MAO Y F, BOTELLA J R, LIU Y G, et al. Gene editing in plants: progress and challenges[J]. National Science Review, 2019, 6(3):421-437.
DOI URL |
[32] | GUO J C, TANG Y D, ZHAO K, et al. Highly efficient CRISPR/Cas9-mediated homologous recombination promotes the rapid generation of bacterial artificial chromosomes of pseudorabies virus[J]. Frontiers in Microbiology, 2016, 7:2110. |
[33] |
WALTON R T, CHRISTIE K A, WHITTAKER M N, et al. Unconstrained genome targeting with near-PAMless engineered CRISPR-Cas9 variants[J]. Science, 2020, 368(6488):290-296.
DOI URL |
[34] |
ZETSCHE B, GOOTENBERG J S, ABUDAYYEH O O, et al. Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR-Cas system[J]. Cell, 2015, 163(3):759-771.
DOI URL |
[35] |
HU X X, WANG C, LIU Q, et al. Targeted mutagenesis in rice using CRISPR-Cpf1 system[J]. Journal of Genetics and Genomics, 2017, 44(1):71-73.
DOI URL |
[36] |
TANG X, LOWDER L G, ZHANG T, et al. A CRISPR-Cpf1 system for efficient genome editing and transcriptional repression in plants[J]. Nature Plants, 2017, 3:17018.
DOI URL |
[37] |
XU R F, QIN R Y, LI H, et al. Generation of targeted mutant rice using a CRISPR-Cpf1 system[J]. Plant Biotechnology Journal, 2017, 15(6):713-717.
DOI URL |
[38] |
WANG M G, MAO Y F, LU Y M, et al. Multiplex gene editing in rice using the CRISPR-Cpf1 system[J]. Molecular Plant, 2017, 10(7):1011-1013.
DOI URL |
[39] | 杨平, 陈春莲, 熊运华, 等. 利用基因编辑技术改良水稻性状的研究进展与展望[J]. 江西农业学报, 2019, 31(4):8-12. |
YANG P, CHEN C L, XIONG Y H, et al. Research advance and prospects of using genome editing technology to improve rice characters[J]. Acta Agriculturae Jiangxi, 2019, 31(4):8-12.(in Chinese with English abstract) | |
[40] |
REES H A, LIU D R. Base editing: precision chemistry on the genome and transcriptome of living cells[J]. Nature Reviews Genetics, 2018, 19(12):770-788.
DOI URL |
[41] | 宗媛, 高彩霞. 碱基编辑系统研究进展[J]. 遗传, 2019, 41(9):777-800. |
ZONG Y, GAO C X. Progress on base editing systems[J]. Hereditas, 2019, 41(9):777-800.(in Chinese with English abstract) | |
[42] |
ANZALONE A V, RANDOLPH P B, DAVIS J R, et al. Search-and-replace genome editing without double-strand breaks or donor DNA[J]. Nature, 2019, 576(7785):149-157.
DOI URL |
[43] |
TOWNSEND J A, WRIGHT D A, WINFREY R J, et al. High-frequency modification of plant genes using engineered zinc-finger nucleases[J]. Nature, 2009, 459(7245):442-445.
DOI URL |
[44] | LI H L, NAKANO T, HOTTA A. Genetic correction using engineered nucleases for gene therapy applications[J]. Development, Growth & Differentiation, 2014, 56(1):63-77. |
[45] |
LIN Q P, ZONG Y, XUE C X, et al. Prime genome editing in rice and wheat[J]. Nature Biotechnology, 2020, 38(5):582-585.
DOI URL |
[46] | ZHU X Y, XIONG L Z. Putative megaenzyme DWA1 plays essential roles in drought resistance by regulating stress-induced wax deposition in rice[J]. Proceedings of the National Academy of Sciences of the United States of America, 2013, 110(44):17790-17795. |
[47] |
MOIN M, BAKSHI A, MADHAV M S, et al. Cas9/sgRNA-based genome editing and other reverse genetic approaches for functional genomic studies in rice[J]. Briefings in Functional Genomics, 2018, 17(5):339-351.
DOI URL |
[48] |
MISHRA R, JOSHI R K, ZHAO K J. Genome editing in rice: recent advances, challenges, and future implications[J]. Frontiers in Plant Science, 2018, 9:1361.
DOI URL |
[49] |
MACOVEI A, SEVILLA N R, CANTOS C, et al. Novel alleles of rice eIF4G generated by CRISPR/Cas9-targeted mutagenesis confer resistance to Rice tungro spherical virus[J]. Plant Biotechnology Journal, 2018, 16(11):1918-1927.
DOI URL |
[50] | 武广珩, 傅仙玉. 利用CRISPR/Cas9技术编辑水稻负调控抗病基因OsEDR1及基因功能分析[J]. 应用与环境生物学报, 2019, 25(6):1375-1380. |
WU G H, FU X Y. Editing rice negative regulation resistance gene OsEDR1 by CRISPR/Cas9 and analysis of its function[J]. Chinese Journal of Applied and Environmental Biology, 2019, 25(6):1375-1380.(in Chinese with English abstract) | |
[51] |
KE Y G, KANG Y R, WU M X, et al. Jasmonic acid-involved OsEDS1 signaling in rice-bacteria interactions[J]. Rice, 2019, 12(1):25.
DOI URL |
[52] |
LIU Q N, NING Y S, ZHANG Y X, et al. OsCUL3a negatively regulates cell death and immunity by degrading OsNPR1 in rice[J]. The Plant Cell, 2017, 29(2):345-359.
DOI URL |
[53] | 吴涛. OsF3H03g和OsF3H04g在水稻与细菌性条斑病菌互作中的功能研究[D]. 泰安: 山东农业大学, 2019. |
WU T. Functional research of OsF3H03g and OsF3H04g in rice and Xanthomonas oryzae pv. oryzicola interaction[D]. Tai’an: Shandong Agricultural University, 2019. (in Chinese with English abstract) | |
[54] | 杨海河, 毕冬玲, 张玉, 等. 基于CRISPR/Cas9技术的水稻pi21基因编辑材料的创制及稻瘟病抗性鉴定[J]. 分子植物育种, 2017, 15(11):4451-4465. |
YANG H H, BI D L, ZHANG Y, et al. Generation of rice pi21 gene editing lines based on CRISPR/Cas9 technology and evaluation of their blast resistance[J]. Molecular Plant Breeding, 2017, 15(11):4451-4465.(in Chinese with English abstract) | |
[55] | 吴凡, 王月, 陈闽, 等. 基于CRISPR/Cas9技术的水稻抗稻瘟病基因Pita突变体的创制[J]. 植物资源与环境学报, 2020, 29(2):1-7. |
WU F, WANG Y, CHEN M, et al. Creation of mutant of blast resistance gene Pita in Oryza sativa based on CRISPR/Cas9 technology[J]. Journal of Plant Resources and Environment, 2020, 29(2):1-7.(in Chinese with English abstract) | |
[56] |
DELTEIL A, GOBBATO E, CAYROL B, et al. Several wall-associated kinases participate positively and negatively in basal defense against rice blast fungus[J]. BMC Plant Biology, 2016, 16(1):1-10.
DOI URL |
[57] | THAKUR S, SINGH P K, DAS A, et al. Extensive sequence variation in rice blast resistance gene Pi54 makes it broad spectrum in nature[J]. Frontiers in Plant Science, 2015, 6:345. |
[58] |
WANG F J, WANG C L, LIU P Q, et al. Enhanced rice blast resistance by CRISPR/Cas9-targeted mutagenesis of the ERF transcription factor gene OsERF922[J]. PLoS One, 2016, 11(4):e0154027.
DOI URL |
[59] | 王芳权, 范方军, 李文奇, 等. 利用CRISPR/Cas9技术敲除水稻Pi21基因的效率分析[J]. 中国水稻科学, 2016, 30(5):469-478. |
WANG F Q, FAN F J, LI W Q, et al. Knock-out efficiency analysis of Pi21 gene using CRISPR/Cas9 in rice[J]. Chinese Journal of Rice Science, 2016, 30(5):469-478.(in Chinese with English abstract) | |
[60] |
NAWAZ G, USMAN B, PENG H W, et al. Knockout of Pi21 by CRISPR/Cas9 and iTRAQ-based proteomic analysis of mutants revealed new insights into M. oryzae resistance in elite rice line[J]. Genes, 2020, 11(7):735.
DOI URL |
[61] |
SERVANE B B, MAIK R, MONTSERRAT S, et al. Targeted promoter editing for rice resistance to Xanthomonas oryzae pv. oryzae reveals differential activities for SWEET14-inducing TAL effectors[J]. Plant Biotechnology Journal, 2017, 15(3):306-317.
DOI URL |
[62] |
OLIVA R, JI C H, ATIENZA-GRANDE G, et al. Broad-spectrum resistance to bacterial blight in rice using genome editing[J]. Nature Biotechnology, 2019, 37(11):1344-1350.
DOI URL |
[63] |
ZHOU J H, PENG Z, LONG J Y, et al. Gene targeting by the TAL effector PthXo2 reveals cryptic resistance gene for bacterial blight of rice[J]. The Plant Journal, 2015, 82(4):632-643.
DOI URL |
[64] |
HONG Y B, LIU Q N, CAO Y R, et al. The OsMPK15 negatively regulates Magnaporthe oryza and Xoo disease resistance via SA and JA signaling pathway in rice[J]. Frontiers in Plant Science, 2019, 10:752.
DOI URL |
[65] | YANG B, SUGIO A, WHITE F F. Os8N3 is a host disease-susceptibility gene for bacterial blight of rice[J]. Proceedings of the National Academy of Sciences of the United States of America, 2006, 103(27):10503-10508. |
[66] |
KIM Y A, MOON H, PARK C J. CRISPR/Cas9-targeted mutagenesis of Os8N3 in rice to confer resistance to Xanthomonas oryzae pv. oryzae[J]. Rice, 2019, 12(1):1-13.
DOI URL |
[67] | BI H H, YANG B. Gene editing with TALEN and CRISPR/cas in rice[J]. Progress in Molecular Biology and Translational Science, 2017, 149:81-98. |
[68] |
REN J, HU X X, WANG K J, et al. Development and application of CRISPR/cas system in rice[J]. Rice Science, 2019, 26(2):69-76.
DOI URL |
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