浙江农业学报 ›› 2025, Vol. 37 ›› Issue (5): 1029-1044.DOI: 10.3969/j.issn.1004-1524.20240463
马荆鄂(), 吴斯琪, 万淑敏, 熊信威, 许继国, 许晶, 饶友生, 周敏(
)
收稿日期:
2024-05-27
出版日期:
2025-05-25
发布日期:
2025-06-11
作者简介:
马荆鄂(1987—),女,湖北荆州人,博士,副教授,研究方向为家禽遗传育种与繁殖。E-mail:majinge@ncnu.edu.cn
通讯作者:
*周敏,E-mail:623808803@qq.com
基金资助:
MA Jing'e(), WU Siqi, WAN Shumin, XIONG Xinwei, XU Jiguo, XU Jing, RAO Yousheng, ZHOU Min(
)
Received:
2024-05-27
Online:
2025-05-25
Published:
2025-06-11
摘要: 试验旨在探讨成年宁都黄鸡睾丸的蛋白质表达谱,筛选大小睾丸个体差异表达蛋白和功能通路,为繁殖性能选育提供基础数据。以6只22周龄宁都黄鸡的睾丸组织为研究对象,分为大睾丸组(H-TES)和小睾丸组(L-TES),采用串联质量标签(tandem mass tags, TMT)技术对2组个体睾丸蛋白质进行差异表达、功能富集和基因互作分析,初步筛选候选蛋白质,分析这些蛋白质在6个个体的表达量与6个睾丸性状指标(左侧睾丸重、右侧睾丸重、总睾丸重、左侧睾丸指数、右侧睾丸指数、总睾丸指数)之间的相关性,分析候选蛋白质的功能。结果表明,宁都黄鸡睾丸中共鉴定到4 683个蛋白质,筛选到144个差异表达蛋白质。GO分析结果表明,差异蛋白质主要参与精子结构组成,具有尿蛋白-谷氨酸连接酶活性、胸腺嘧啶结合、脱氢抗坏血酸跨膜转运体活性等功能。差异蛋白质显著富集的KEGG通路为精氨酸和脯氨酸代谢、泛酸和辅酶A的生物合成、β-丙氨酸代谢等。蛋白质互作网络中有34个差异蛋白质,初步筛选出30个候选蛋白质。结合相关性分析和文献查阅,筛选出16个关键候选蛋白质,即SPAG6、TPPP2、ENKUR、ODF2、SAXO1、TCP11、DNALI1、CCDC63、TSSK3、TEKT2、TEKT3、ALDH2、DNAH5、CCDC40、CCDC39、DNAH10。结合关键候选蛋白质的功能,初步确定精氨酸和脯氨酸代谢、泛酸和辅酶A生物合成、β-丙氨酸代谢、紧密连接、间隙连接是睾丸性状调控关键KEGG通路。研究结果为地方鸡种睾丸质量性状选育提供了基础依据。
中图分类号:
马荆鄂, 吴斯琪, 万淑敏, 熊信威, 许继国, 许晶, 饶友生, 周敏. 基于串联质量标签(TMT)技术的宁都黄鸡大小睾丸蛋白质组学研究[J]. 浙江农业学报, 2025, 37(5): 1029-1044.
MA Jing'e, WU Siqi, WAN Shumin, XIONG Xinwei, XU Jiguo, XU Jing, RAO Yousheng, ZHOU Min. Proteomic study of large and small testes in Ningdu Yellow chicken based on tandem mass tags(TMT) technology[J]. Acta Agriculturae Zhejiangensis, 2025, 37(5): 1029-1044.
图1 睾丸蛋白质鉴定与分析 A,总蛋白质和肽段鉴定结果;B,H-TES组和L-TES组PCA分析结果(红点代表H-TES组,蓝点代表L-TES组);C,差异蛋白质鉴定结果(绿点代表下调蛋白质,黑点代表无差异蛋白质,红点代表上调蛋白质)。
Fig.1 The identification and analysis of testicular proteins A, Total protein and peptide identification results; B, PCA analysis result of H-TES and L-TES groups (red dots represent H-TES group, blue dots represent L-TES group); C, The identification of the differential expressed protein between H-TES and L-TES(green dots represent down-regulated proteins, black dots represent non-differential proteins, red dots represent up-regulated proteins).
图2 差异蛋白质GO功能注释 A,差异蛋白质GO注释结果;B,差异表达蛋白质在GO二级注释生物学过程中富集分布气泡图;C,差异表达蛋白质在GO二级注释细胞组分中富集分布气泡图;D差异表达蛋白质在GO二级注释分子功能中富集分布气泡图。
Fig.2 GO annotation of differential expressed proteins A, GO annotation of differentially expressed proteins; B, Enrichment distribution bubble map of differentially expressed proteins in biological process of GO secondary annotation; C, Enrichment distribution bubble map of differentially expressed proteins in cellular component of GO secondary annotation; D, Enrichment distribution bubble map of differentially expressed proteins in molecular function of GO secondary annotation.
GO条目 GO term | GO注释号 GO ID | 蛋白质注释号 Protein ID | NR注释 NR annotation | log2FC |
---|---|---|---|---|
外动力臂组件 Outer dynein arm assembly | GO:0036158 | ONT.42533.8 | 动力蛋白中链1,轴丝异构体X1 Dynein intermediate chain 1, axonemal isoform X1 (DNAI1) | -0.660 |
ONT.34575.3 | 卷曲螺旋结构域蛋白63异构体X1 Coiled-coil domain?containing protein 63 isoform X1(CCDC63) | -0.716 | ||
ONT.42533.12 | 动力蛋白中链1,轴丝异构体X1 Dynein intermediate chain 1, axonemal isoform X1 (DNAI1) | -0.724 | ||
XM_040695761.2 | 动力蛋白重链5,轴丝样异构体X2 Dynein heavy chain 5, axonemal-like isoform X2 (DNAH5) | -0.842 | ||
精子鞭毛 Sperm flagellum | GO:0036126 | ONT.31000.9 | 动力调节复合体亚基4 Dynein regulatory complex subunit 4 (GAS8) | -0.663 |
ONT.33635.4 | 筑丝蛋白4 Tektin-4 (MAFIP) | -0.653 | ||
ONT.36153.15 | 筑丝蛋白3 Tektin-3 (TEKT3) | -0.826 | ||
ONT.29248.17 | 动力调节复合蛋白9 Dynein regulatory complex protein 9 (IQCG) | -0.685 | ||
XM_025147182.3 | 精子相关抗原6 Sperm-associated antigen 6 (SPAG6) | -0.690 | ||
ONT.44886.3 | 促微管聚合蛋白家族成员2 Tubulin polymerization-promoting protein family member 2 (TPPP2) | -1.394 | ||
XM_418600.5 | enkurin样蛋白Enkurin-like(ENKUR) | -0.698 | ||
ONT.35527.13 | 外致密纤维蛋白2异构体X3 Outer dense fiber protein 2 isoform X3 (ODF2) | -0.646 | ||
ONT.35594.2 | 精子顶体相关蛋白9异构体X1 Sperm acrosome-associated protein 9 isoform X1 (SPACA9) | -0.973 | ||
ONT.40499.8 | T复合蛋白11同源物异构体X1 T-complex protein 11 homolog isoform X1(TCP11) | -0.618 | ||
ONT.44687.3 | 轴丝微管稳定因子1 Stabilizer of axonemal microtubules 1 (SAXO1) | -0.983 | ||
精子主段 Sperm principal piece | GO:0097228 | XM_025147182.3 | 精子相关抗原6 Sperm-associated antigen 6(SPAG6) | -0.690 |
ONT.33635.4 | 筑丝蛋白4 Tektin-4(MAFIP) | -0.653 | ||
XM_418600.5 | enkurin样蛋白Enkurin-like (ENKUR) | -0.698 | ||
外动力臂 Outer dynein arm | GO:0036157 | ONT.42533.8 | 动力蛋白中链1,轴丝异构体X1 Dynein intermediate chain 1, axonemal isoform X1 (DNAI1) | -0.660 |
ONT.42533.12 | 动力蛋白中链1,轴丝异构体X1 Dynein intermediate chain 1, axonemal isoform X1 (DNAI1) | -0.724 | ||
XM_040695761.2 | 动力蛋白重链5,轴丝样异构体X2 Dynein heavy chain 5, axonemal-like isoform X2 (DNAH5) | -0.842 | ||
轴丝部分 Axoneme part | GO:0044447 | ONT.44687.3 | 轴丝微管稳定因子1 Stabilizer of axonemal microtubules 1 (SAXO1) | -0.983 |
ONT.42533.8 | 动力蛋白中链1,轴丝异构体X1 Dynein intermediate chain 1, axonemal isoform X1 (DNAI1) | -0.660 | ||
XM_025147182.3 | 精子相关抗原6 Sperm-associated antigen 6(SPAG6) | -0.690 | ||
ONT.39541.6 | 动力蛋白轴丝轻中间多肽1 Axonemal dynein light intermediate polypeptide 1 (DNALI1) | -0.630 | ||
内动力臂组件 Inner dynein arm assembly | GO:0036159 | ONT.36702.4 | 卷曲螺旋结构域蛋白40 Coiled-coil domain?containing protein 40(CCDC40) | -0.646 |
ONT.28739.10 | 卷曲螺旋结构域蛋白39 Coiled-coil domain?containing protein 39(CCDC39) | -0.742 | ||
ONT.39541.6 | 动力蛋白轴丝轻中间多肽1 Axonemal dynein light intermediate polypeptide 1 (DNALI1) | -0.630 | ||
ONT.39554.2 | 筑丝蛋白2 Tektin-2(TEKT2) | -0.710 |
表1 与精子结构组成相关的差异蛋白质
Table 1 Differential expressed proteins associated with sperm structural composition
GO条目 GO term | GO注释号 GO ID | 蛋白质注释号 Protein ID | NR注释 NR annotation | log2FC |
---|---|---|---|---|
外动力臂组件 Outer dynein arm assembly | GO:0036158 | ONT.42533.8 | 动力蛋白中链1,轴丝异构体X1 Dynein intermediate chain 1, axonemal isoform X1 (DNAI1) | -0.660 |
ONT.34575.3 | 卷曲螺旋结构域蛋白63异构体X1 Coiled-coil domain?containing protein 63 isoform X1(CCDC63) | -0.716 | ||
ONT.42533.12 | 动力蛋白中链1,轴丝异构体X1 Dynein intermediate chain 1, axonemal isoform X1 (DNAI1) | -0.724 | ||
XM_040695761.2 | 动力蛋白重链5,轴丝样异构体X2 Dynein heavy chain 5, axonemal-like isoform X2 (DNAH5) | -0.842 | ||
精子鞭毛 Sperm flagellum | GO:0036126 | ONT.31000.9 | 动力调节复合体亚基4 Dynein regulatory complex subunit 4 (GAS8) | -0.663 |
ONT.33635.4 | 筑丝蛋白4 Tektin-4 (MAFIP) | -0.653 | ||
ONT.36153.15 | 筑丝蛋白3 Tektin-3 (TEKT3) | -0.826 | ||
ONT.29248.17 | 动力调节复合蛋白9 Dynein regulatory complex protein 9 (IQCG) | -0.685 | ||
XM_025147182.3 | 精子相关抗原6 Sperm-associated antigen 6 (SPAG6) | -0.690 | ||
ONT.44886.3 | 促微管聚合蛋白家族成员2 Tubulin polymerization-promoting protein family member 2 (TPPP2) | -1.394 | ||
XM_418600.5 | enkurin样蛋白Enkurin-like(ENKUR) | -0.698 | ||
ONT.35527.13 | 外致密纤维蛋白2异构体X3 Outer dense fiber protein 2 isoform X3 (ODF2) | -0.646 | ||
ONT.35594.2 | 精子顶体相关蛋白9异构体X1 Sperm acrosome-associated protein 9 isoform X1 (SPACA9) | -0.973 | ||
ONT.40499.8 | T复合蛋白11同源物异构体X1 T-complex protein 11 homolog isoform X1(TCP11) | -0.618 | ||
ONT.44687.3 | 轴丝微管稳定因子1 Stabilizer of axonemal microtubules 1 (SAXO1) | -0.983 | ||
精子主段 Sperm principal piece | GO:0097228 | XM_025147182.3 | 精子相关抗原6 Sperm-associated antigen 6(SPAG6) | -0.690 |
ONT.33635.4 | 筑丝蛋白4 Tektin-4(MAFIP) | -0.653 | ||
XM_418600.5 | enkurin样蛋白Enkurin-like (ENKUR) | -0.698 | ||
外动力臂 Outer dynein arm | GO:0036157 | ONT.42533.8 | 动力蛋白中链1,轴丝异构体X1 Dynein intermediate chain 1, axonemal isoform X1 (DNAI1) | -0.660 |
ONT.42533.12 | 动力蛋白中链1,轴丝异构体X1 Dynein intermediate chain 1, axonemal isoform X1 (DNAI1) | -0.724 | ||
XM_040695761.2 | 动力蛋白重链5,轴丝样异构体X2 Dynein heavy chain 5, axonemal-like isoform X2 (DNAH5) | -0.842 | ||
轴丝部分 Axoneme part | GO:0044447 | ONT.44687.3 | 轴丝微管稳定因子1 Stabilizer of axonemal microtubules 1 (SAXO1) | -0.983 |
ONT.42533.8 | 动力蛋白中链1,轴丝异构体X1 Dynein intermediate chain 1, axonemal isoform X1 (DNAI1) | -0.660 | ||
XM_025147182.3 | 精子相关抗原6 Sperm-associated antigen 6(SPAG6) | -0.690 | ||
ONT.39541.6 | 动力蛋白轴丝轻中间多肽1 Axonemal dynein light intermediate polypeptide 1 (DNALI1) | -0.630 | ||
内动力臂组件 Inner dynein arm assembly | GO:0036159 | ONT.36702.4 | 卷曲螺旋结构域蛋白40 Coiled-coil domain?containing protein 40(CCDC40) | -0.646 |
ONT.28739.10 | 卷曲螺旋结构域蛋白39 Coiled-coil domain?containing protein 39(CCDC39) | -0.742 | ||
ONT.39541.6 | 动力蛋白轴丝轻中间多肽1 Axonemal dynein light intermediate polypeptide 1 (DNALI1) | -0.630 | ||
ONT.39554.2 | 筑丝蛋白2 Tektin-2(TEKT2) | -0.710 |
图3 差异蛋白质KEGG功能注释 A,差异蛋白质KEGG通路注释分类结果;B,差异表达蛋白质在KEGG通路中富集分布气泡图。
Fig.3 KEGG annotation of the differential expressed proteins A, Annotated classification of differential expressed proteins in KEGG pathways; B, Enrichment distribution bubble map of differentially expressed proteins in KEGG pathways.
KEGG注释号 KEGG ID | 信号通路名称 Signal pathway name | 蛋白质注释号 Protein ID | NR注释 NR annotation | log2FC |
---|---|---|---|---|
ko00770 | 泛酸和辅酶A生物合成 Pantothenate and CoA biosynthesis | NM_001277426.2 | 二氢嘧啶酶Dihydropyrimidinase(DPYS) | -1.113 |
ONT.34582.1 | 醛脱氢酶,线粒体异构体X3 Aldehyde dehydrogenase, mitochondrial isoform X3 (ALDH2) | 0.847 | ||
ko00410 | β-丙氨酸代谢 β-Alanine metabolism | ONT.34582.1 | 醛脱氢酶,线粒体异构体X3 Aldehyde dehydrogenase, mitochondrial isoform X3 (ALDH2) | 0.847 |
NM_001277426.2 | 二氢嘧啶酶Dihydropyrimidinase(DPYS) | -1.113 | ||
ko00330 | 精氨酸和脯氨酸代谢 Arginine and proline metabolism | NM_205310.2 | 肌酸激酶,睾丸同工酶 Creatine kinase, testis isozyme(CKB) | -0.76 |
ONT.45247.3 | 线粒体S型肌酸激酶 Creatine kinase S-type, mitochondrial(CKMT2) | -0.814 | ||
XM_046941482.1 | 肌酸激酶,睾丸同工酶 Creatine kinase, testis isozyme (CKB) | -0.709 | ||
ONT.34582.1 | 醛脱氢酶,线粒体异构体X3 Aldehyde dehydrogenase, mitochondrial isoform X3 (ALDH2) | 0.847 |
表2 基于最显著富集前3名KEGG通路筛选的差异蛋白质
Table 2 The differential expressed proteins identified based on the top three enriched KEGG pathways
KEGG注释号 KEGG ID | 信号通路名称 Signal pathway name | 蛋白质注释号 Protein ID | NR注释 NR annotation | log2FC |
---|---|---|---|---|
ko00770 | 泛酸和辅酶A生物合成 Pantothenate and CoA biosynthesis | NM_001277426.2 | 二氢嘧啶酶Dihydropyrimidinase(DPYS) | -1.113 |
ONT.34582.1 | 醛脱氢酶,线粒体异构体X3 Aldehyde dehydrogenase, mitochondrial isoform X3 (ALDH2) | 0.847 | ||
ko00410 | β-丙氨酸代谢 β-Alanine metabolism | ONT.34582.1 | 醛脱氢酶,线粒体异构体X3 Aldehyde dehydrogenase, mitochondrial isoform X3 (ALDH2) | 0.847 |
NM_001277426.2 | 二氢嘧啶酶Dihydropyrimidinase(DPYS) | -1.113 | ||
ko00330 | 精氨酸和脯氨酸代谢 Arginine and proline metabolism | NM_205310.2 | 肌酸激酶,睾丸同工酶 Creatine kinase, testis isozyme(CKB) | -0.76 |
ONT.45247.3 | 线粒体S型肌酸激酶 Creatine kinase S-type, mitochondrial(CKMT2) | -0.814 | ||
XM_046941482.1 | 肌酸激酶,睾丸同工酶 Creatine kinase, testis isozyme (CKB) | -0.709 | ||
ONT.34582.1 | 醛脱氢酶,线粒体异构体X3 Aldehyde dehydrogenase, mitochondrial isoform X3 (ALDH2) | 0.847 |
图4 蛋白质互作网络图 图中的圆圈(节点)之间的连线表示为蛋白质之间具有相互作用,线的粗细、疏密度表示互作关系的数据支持度,圆圈填充颜色由紫色到灰色,对应聚集系数值由低到高。
Fig.4 Protein-protein interaction network The lines between the circles (nodes) in the figure indicate that the proteins have interactions with each other, while the thickness and sparseness of the lines indicate the data support of the interactions, and the color of the circle fill from purple to gray corresponds to the aggregation coefficient value from low to high.
蛋白质ID Protein ID | KEGG信号通路 KEGG signal pathway | NR注释 NR annotation | log2FC |
---|---|---|---|
ONT.42533.8 | — | 动力蛋白中链1,轴丝异构体X1 Dynein intermediate chain 1, axonemal isoform X1(DNAI1) | -0.660 |
ONT.39541.6 | — | 动力蛋白轴丝轻中间多肽1 Axonemal dynein light intermediate polypeptide 1(DNALI1) | -0.630 |
ONT.34575.3 | — | ||
ONT.34953.4 | — | 轴丝动力蛋白重链10 Dynein heavy chain 10, axonemal (DNAH10) | -0.590 |
XM_040695761.2 | — | 动力蛋白重链5,轴丝样异构体X2 Dynein heavy chain 5, axonemal-like isoform X2 (DNAH5) | -0.842 |
ONT.1292.4 | 吞噬体Phagosome (ko04145) 细胞凋亡Apoptosis (ko04210) 紧密连接Tight junction (ko04530) 间隙连接Gap junction (ko04540) | α-微管蛋白2链 Tubulin alpha-2 chain(TUBA8B) | -0.924 |
ONT.39373.1 | — | 睾丸特异性丝/苏氨酸蛋白激酶3 Testis-specific serine/threonine-protein kinase 3(TSSK3) | -0.805 |
XM_426278.5 | — | 假设蛋白RvY_17884 Hypothetical protein RvY_17884(LOC428720) | -1.293 |
ONT.40848.2 | 心脏肌肉收缩 Cardiac muscle contraction (ko04260) 心肌细胞肾上腺素能信号传导 Adrenergic signaling in cardiomyocytes (ko04261) Apelin信号通路 Apelin signaling pathway (ko04371) | 肌球蛋白轻链4 Myosin light chain 4 (MYL4) | -0.587 |
ONT.36865.19 | — | 钙/钙调蛋白依赖性蛋白激酶激酶1异构体X2 Calcium/calmodulin-dependent protein kinase kinase 1 isoform X2 (CAMKK1) | -0.587 |
表3 蛋白质互作网络节点度最高前10的蛋白质
Table 3 The top ten proteins with the highest node degree in the protein interaction network
蛋白质ID Protein ID | KEGG信号通路 KEGG signal pathway | NR注释 NR annotation | log2FC |
---|---|---|---|
ONT.42533.8 | — | 动力蛋白中链1,轴丝异构体X1 Dynein intermediate chain 1, axonemal isoform X1(DNAI1) | -0.660 |
ONT.39541.6 | — | 动力蛋白轴丝轻中间多肽1 Axonemal dynein light intermediate polypeptide 1(DNALI1) | -0.630 |
ONT.34575.3 | — | ||
ONT.34953.4 | — | 轴丝动力蛋白重链10 Dynein heavy chain 10, axonemal (DNAH10) | -0.590 |
XM_040695761.2 | — | 动力蛋白重链5,轴丝样异构体X2 Dynein heavy chain 5, axonemal-like isoform X2 (DNAH5) | -0.842 |
ONT.1292.4 | 吞噬体Phagosome (ko04145) 细胞凋亡Apoptosis (ko04210) 紧密连接Tight junction (ko04530) 间隙连接Gap junction (ko04540) | α-微管蛋白2链 Tubulin alpha-2 chain(TUBA8B) | -0.924 |
ONT.39373.1 | — | 睾丸特异性丝/苏氨酸蛋白激酶3 Testis-specific serine/threonine-protein kinase 3(TSSK3) | -0.805 |
XM_426278.5 | — | 假设蛋白RvY_17884 Hypothetical protein RvY_17884(LOC428720) | -1.293 |
ONT.40848.2 | 心脏肌肉收缩 Cardiac muscle contraction (ko04260) 心肌细胞肾上腺素能信号传导 Adrenergic signaling in cardiomyocytes (ko04261) Apelin信号通路 Apelin signaling pathway (ko04371) | 肌球蛋白轻链4 Myosin light chain 4 (MYL4) | -0.587 |
ONT.36865.19 | — | 钙/钙调蛋白依赖性蛋白激酶激酶1异构体X2 Calcium/calmodulin-dependent protein kinase kinase 1 isoform X2 (CAMKK1) | -0.587 |
蛋白质注释号 Protein ID | log2FC | 基因名称 Gene name | 屠宰活重 Slaughter weight | 左睾丸重 Left testis weight | 右睾丸重 Right testis weight | 睾丸总重 Total testis weight | 左睾丸率 Left testis percentage | 右睾丸率 Right testis percentage | 总睾丸率 Total testis percentage | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ONT.42533.8 | -0.660 | DNAI1 | 0.836* | 0.929** | 0.931** | 0.947** | 0.891* | 0.848* | 0.883* | ||||||||
ONT.42533.12 | -0.724 | DNAI1 | 0.862* | 0.947** | 0.948** | 0.965** | 0.912* | 0.868* | 0.904* | ||||||||
ONT.34575.3 | -0.716 | CCDC63 | 0.778 | 0.927** | 0.984** | 0.973** | 0.924** | 0.933** | 0.944** | ||||||||
XM_040695761.2 | -0.842 | DNAH5 | 0.889* | 0.955** | 0.896* | 0.943** | 0.903* | 0.803 | 0.864* | ||||||||
ONT.31000.9 | -0.663 | GAS8 | 0.831* | 0.948** | 0.967** | 0.975** | 0.926** | 0.899* | 0.927** | ||||||||
ONT.33635.4 | -0.653 | MAFIP | 0.843* | 0.968** | 0.956** | 0.980** | 0.940** | 0.884* | 0.926** | ||||||||
ONT.36153.15 | -0.826 | TEKT3 | 0.783 | 0.879* | 0.953** | 0.933** | 0.863* | 0.889* | 0.891* | ||||||||
ONT.29248.17 | -0.685 | IQCG | 0.863* | 0.928** | 0.935** | 0.949** | 0.888* | 0.851* | 0.883* | ||||||||
XM_025147182.3 | -0.690 | SPAG6 | 0.698 | 0.828* | 0.942** | 0.902* | 0.829* | 0.895* | 0.878* | ||||||||
ONT.44886.3 | -1.394 | TPPP2 | 0.756 | 0.907* | 0.970** | 0.956** | 0.901* | 0.916* | 0.924** | ||||||||
XM_418600.5 | -0.698 | ENKUR | 0.810 | 0.903* | 0.943** | 0.940** | 0.875* | 0.868* | 0.886* | ||||||||
ONT.35527.13 | -0.646 | ODF2 | 0.688 | 0.938** | 0.997** | 0.985** | 0.964** | 0.976** | 0.987** | ||||||||
ONT.35594.2 | -0.973 | SPACA9 | 0.852* | 0.954** | 0.925** | 0.957** | 0.912* | 0.839* | 0.888* | ||||||||
ONT.40499.8 | -0.618 | TCP11 | 0.806 | 0.960** | 0.902* | 0.948** | 0.924** | 0.827* | 0.888* | ||||||||
ONT.44687.3 | -0.983 | SAXO1 | 0.831* | 0.934** | 0.951** | 0.960** | 0.908* | 0.880* | 0.908* | ||||||||
ONT.39541.6 | -0.630 | DNALI1 | 0.786 | 0.901* | 0.966** | 0.951** | 0.892* | 0.910* | 0.916* | ||||||||
ONT.36702.4 | -0.646 | CCDC40 | 0.908* | 0.907* | 0.889* | 0.914* | 0.849* | 0.789 | 0.831* | ||||||||
ONT.28739.10 | -0.742 | CCDC39 | 0.878* | 0.944** | 0.849* | 0.912* | 0.877* | 0.744 | 0.820* | ||||||||
ONT.39554.2 | -0.710 | TEKT2 | 0.806 | 0.905* | 0.961** | 0.951** | 0.888* | 0.896* | 0.907* | ||||||||
NM_001277426.2 | -1.113 | DPYS | 0.735 | 0.899* | 0.981** | 0.958** | 0.905* | 0.939** | 0.938** | ||||||||
ONT.34582.1 | 0.847 | ALDH2 | -0.708 | -0.942** | -0.988** | -0.983** | -0.965** | -0.965** | -0.981** | ||||||||
NM_205310.2 | -0.760 | CKB | 0.837* | 0.912* | 0.932** | 0.939** | 0.875* | 0.849* | 0.876* | ||||||||
XM_046941482.1 | -0.709 | CKB | 0.873* | 0.883* | 0.856* | 0.885* | 0.815* | 0.746 | 0.792 | ||||||||
ONT.45247.3 | -0.814 | CKMT2 | 0.742 | 0.912* | 0.988** | 0.968** | 0.920** | 0.947** | 0.949** | ||||||||
ONT.34953.4 | -0.590 | DNAH10 | 0.633 | 0.782 | 0.946** | 0.880* | 0.822* | 0.937** | 0.897* | ||||||||
ONT.1292.4 | -0.924 | TUBA8B | 0.784 | 0.952** | 0.972** | 0.980** | 0.939** | 0.913* | 0.941** | ||||||||
ONT.39373.1 | -0.805 | TSSK3 | 0.830* | 0.889* | 0.944** | 0.933** | 0.865* | 0.874* | 0.884* | ||||||||
XM_426278.5 | -1.293 | LOC428720 | 0.648 | 0.893* | 0.994** | 0.961** | 0.927** | 0.980** | 0.971** | ||||||||
ONT.40848.2 | -0.587 | MYL4 | 0.947** | 0.919** | 0.766 | 0.857* | 0.836* | 0.653 | 0.752 | ||||||||
ONT.36865.19 | -0.587 | CAMKK1 | 0.884* | 0.956** | 0.945** | 0.968** | 0.923** | 0.869* | 0.910* |
表4 候选蛋白质在6个个体中的表达量与6个睾丸性状指标的相关性
Table 4 Correlation analysis of candidate proteins expression in six individuals with six testicular trait indicators
蛋白质注释号 Protein ID | log2FC | 基因名称 Gene name | 屠宰活重 Slaughter weight | 左睾丸重 Left testis weight | 右睾丸重 Right testis weight | 睾丸总重 Total testis weight | 左睾丸率 Left testis percentage | 右睾丸率 Right testis percentage | 总睾丸率 Total testis percentage | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ONT.42533.8 | -0.660 | DNAI1 | 0.836* | 0.929** | 0.931** | 0.947** | 0.891* | 0.848* | 0.883* | ||||||||
ONT.42533.12 | -0.724 | DNAI1 | 0.862* | 0.947** | 0.948** | 0.965** | 0.912* | 0.868* | 0.904* | ||||||||
ONT.34575.3 | -0.716 | CCDC63 | 0.778 | 0.927** | 0.984** | 0.973** | 0.924** | 0.933** | 0.944** | ||||||||
XM_040695761.2 | -0.842 | DNAH5 | 0.889* | 0.955** | 0.896* | 0.943** | 0.903* | 0.803 | 0.864* | ||||||||
ONT.31000.9 | -0.663 | GAS8 | 0.831* | 0.948** | 0.967** | 0.975** | 0.926** | 0.899* | 0.927** | ||||||||
ONT.33635.4 | -0.653 | MAFIP | 0.843* | 0.968** | 0.956** | 0.980** | 0.940** | 0.884* | 0.926** | ||||||||
ONT.36153.15 | -0.826 | TEKT3 | 0.783 | 0.879* | 0.953** | 0.933** | 0.863* | 0.889* | 0.891* | ||||||||
ONT.29248.17 | -0.685 | IQCG | 0.863* | 0.928** | 0.935** | 0.949** | 0.888* | 0.851* | 0.883* | ||||||||
XM_025147182.3 | -0.690 | SPAG6 | 0.698 | 0.828* | 0.942** | 0.902* | 0.829* | 0.895* | 0.878* | ||||||||
ONT.44886.3 | -1.394 | TPPP2 | 0.756 | 0.907* | 0.970** | 0.956** | 0.901* | 0.916* | 0.924** | ||||||||
XM_418600.5 | -0.698 | ENKUR | 0.810 | 0.903* | 0.943** | 0.940** | 0.875* | 0.868* | 0.886* | ||||||||
ONT.35527.13 | -0.646 | ODF2 | 0.688 | 0.938** | 0.997** | 0.985** | 0.964** | 0.976** | 0.987** | ||||||||
ONT.35594.2 | -0.973 | SPACA9 | 0.852* | 0.954** | 0.925** | 0.957** | 0.912* | 0.839* | 0.888* | ||||||||
ONT.40499.8 | -0.618 | TCP11 | 0.806 | 0.960** | 0.902* | 0.948** | 0.924** | 0.827* | 0.888* | ||||||||
ONT.44687.3 | -0.983 | SAXO1 | 0.831* | 0.934** | 0.951** | 0.960** | 0.908* | 0.880* | 0.908* | ||||||||
ONT.39541.6 | -0.630 | DNALI1 | 0.786 | 0.901* | 0.966** | 0.951** | 0.892* | 0.910* | 0.916* | ||||||||
ONT.36702.4 | -0.646 | CCDC40 | 0.908* | 0.907* | 0.889* | 0.914* | 0.849* | 0.789 | 0.831* | ||||||||
ONT.28739.10 | -0.742 | CCDC39 | 0.878* | 0.944** | 0.849* | 0.912* | 0.877* | 0.744 | 0.820* | ||||||||
ONT.39554.2 | -0.710 | TEKT2 | 0.806 | 0.905* | 0.961** | 0.951** | 0.888* | 0.896* | 0.907* | ||||||||
NM_001277426.2 | -1.113 | DPYS | 0.735 | 0.899* | 0.981** | 0.958** | 0.905* | 0.939** | 0.938** | ||||||||
ONT.34582.1 | 0.847 | ALDH2 | -0.708 | -0.942** | -0.988** | -0.983** | -0.965** | -0.965** | -0.981** | ||||||||
NM_205310.2 | -0.760 | CKB | 0.837* | 0.912* | 0.932** | 0.939** | 0.875* | 0.849* | 0.876* | ||||||||
XM_046941482.1 | -0.709 | CKB | 0.873* | 0.883* | 0.856* | 0.885* | 0.815* | 0.746 | 0.792 | ||||||||
ONT.45247.3 | -0.814 | CKMT2 | 0.742 | 0.912* | 0.988** | 0.968** | 0.920** | 0.947** | 0.949** | ||||||||
ONT.34953.4 | -0.590 | DNAH10 | 0.633 | 0.782 | 0.946** | 0.880* | 0.822* | 0.937** | 0.897* | ||||||||
ONT.1292.4 | -0.924 | TUBA8B | 0.784 | 0.952** | 0.972** | 0.980** | 0.939** | 0.913* | 0.941** | ||||||||
ONT.39373.1 | -0.805 | TSSK3 | 0.830* | 0.889* | 0.944** | 0.933** | 0.865* | 0.874* | 0.884* | ||||||||
XM_426278.5 | -1.293 | LOC428720 | 0.648 | 0.893* | 0.994** | 0.961** | 0.927** | 0.980** | 0.971** | ||||||||
ONT.40848.2 | -0.587 | MYL4 | 0.947** | 0.919** | 0.766 | 0.857* | 0.836* | 0.653 | 0.752 | ||||||||
ONT.36865.19 | -0.587 | CAMKK1 | 0.884* | 0.956** | 0.945** | 0.968** | 0.923** | 0.869* | 0.910* |
基因名称 Gene name | log2FC | 功能 Function |
---|---|---|
SPAG6 | -0.690 | 调节精子活力,调控精子顶体形成,影响精子发生 Regulation of sperm motility and sperm acrosome formation, influencing on spermatogenesis |
TPPP2 | -1.394 | 与精子线粒体结构和功能相关,影响精子数量、活力以及生育能力Correlating with sperm mitochondrial structure and function, affecting sperm count, viability, and fertility |
ENKUR | -0.698 | 调节鞭毛的弯曲Regulation of flagellar curvature |
ODF2 | -0.646 | 调节精子活力Regulation of sperm motility |
SAXO1 | -0.983 | 可能在精子鞭毛发生、稳定性和长度方面起着关键作用 May play a key role in the biogenesis, stability and length of the sperm flagellum |
TCP11 | -0.618 | 影响精子活力Influencing on sperm motility |
DNALI1 | -0.630 | 参与精子发育和精子鞭毛正确组装Involved in sperm development and correct assembly of the sperm flagellum |
CCDC63 | -0.716 | 敲除会因鞭毛缩短导致雄性小鼠不育Knockout causes sterility in male mice due to flagellar shortening |
CCDC39 | -0.742 | 在精子鞭毛中相互作用,影响雄性生育能力Interacting in the sperm flagellum and affecting male fertility |
CCDC40 | -0.646 | |
DNAH10 | -0.590 | 缺失会导致精子鞭毛形态异常Deficiency leads to abnormal sperm flagellar morphology |
DNAH5 | -0.842 | 与精子活力和形态有关Related to sperm motility and morphology |
TSSK3 | -0.805 | 精子形态发生和雄性维持生育能力所必需,影响精子形成 Essential for sperm morphogenesis and for male maintenance of fertility, affecting sperm formation |
TEKT2 | -0.710 | 作为鞭毛稳定性或精子活力所需的外致密纤维附属分子发挥作用 Playing a role as an outer dense fiber accessory molecule required for flagellar stability or sperm motility |
TEKT3 | -0.826 | 对鞭毛稳定性以及精子活力起作用,参与顶体相关事件 Playing a role in flagellar stability and sperm motility, participation in acrosome-related events |
ALDH2 | 0.847 | 抗细胞凋亡Antiapoptotic |
表5 候选基因功能
Table 5 Functional of candidate genes
基因名称 Gene name | log2FC | 功能 Function |
---|---|---|
SPAG6 | -0.690 | 调节精子活力,调控精子顶体形成,影响精子发生 Regulation of sperm motility and sperm acrosome formation, influencing on spermatogenesis |
TPPP2 | -1.394 | 与精子线粒体结构和功能相关,影响精子数量、活力以及生育能力Correlating with sperm mitochondrial structure and function, affecting sperm count, viability, and fertility |
ENKUR | -0.698 | 调节鞭毛的弯曲Regulation of flagellar curvature |
ODF2 | -0.646 | 调节精子活力Regulation of sperm motility |
SAXO1 | -0.983 | 可能在精子鞭毛发生、稳定性和长度方面起着关键作用 May play a key role in the biogenesis, stability and length of the sperm flagellum |
TCP11 | -0.618 | 影响精子活力Influencing on sperm motility |
DNALI1 | -0.630 | 参与精子发育和精子鞭毛正确组装Involved in sperm development and correct assembly of the sperm flagellum |
CCDC63 | -0.716 | 敲除会因鞭毛缩短导致雄性小鼠不育Knockout causes sterility in male mice due to flagellar shortening |
CCDC39 | -0.742 | 在精子鞭毛中相互作用,影响雄性生育能力Interacting in the sperm flagellum and affecting male fertility |
CCDC40 | -0.646 | |
DNAH10 | -0.590 | 缺失会导致精子鞭毛形态异常Deficiency leads to abnormal sperm flagellar morphology |
DNAH5 | -0.842 | 与精子活力和形态有关Related to sperm motility and morphology |
TSSK3 | -0.805 | 精子形态发生和雄性维持生育能力所必需,影响精子形成 Essential for sperm morphogenesis and for male maintenance of fertility, affecting sperm formation |
TEKT2 | -0.710 | 作为鞭毛稳定性或精子活力所需的外致密纤维附属分子发挥作用 Playing a role as an outer dense fiber accessory molecule required for flagellar stability or sperm motility |
TEKT3 | -0.826 | 对鞭毛稳定性以及精子活力起作用,参与顶体相关事件 Playing a role in flagellar stability and sperm motility, participation in acrosome-related events |
ALDH2 | 0.847 | 抗细胞凋亡Antiapoptotic |
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