Acta Agriculturae Zhejiangensis ›› 2025, Vol. 37 ›› Issue (8): 1605-1614.DOI: 10.3969/j.issn.1004-1524.20241020
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GUAN Xiusheng1(), LIU Tieshan2, WANG Juan2, ZHANG Maolin2, LIU Chunxiao2, DONG Rui2, GUAN Haiying2, LIU Qiang2, XU Yang1, HE Chunmei2,*(
)
Received:
2024-11-25
Online:
2025-08-25
Published:
2025-09-03
Contact:
HE Chunmei
CLC Number:
GUAN Xiusheng, LIU Tieshan, WANG Juan, ZHANG Maolin, LIU Chunxiao, DONG Rui, GUAN Haiying, LIU Qiang, XU Yang, HE Chunmei. Bioinformatics analysis and cloning of NF-YA family genes in maize(Zea mays)[J]. Acta Agriculturae Zhejiangensis, 2025, 37(8): 1605-1614.
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URL: http://www.zjnyxb.cn/EN/10.3969/j.issn.1004-1524.20241020
基因名称 | 基因ID | 正向引物序列 | 反向引物序列 |
---|---|---|---|
Gene name | Gene ID | Forward primer sequence(5'-3') | Reverse primer sequence(5'-3') |
ZmNF-YA1 | Zm00001d027874 | ATCCATGCTCCCTCCTCATCTCAC | CCCGGCTCACCGCCCCCTCTCG |
ZmNF-YA2 | Zm00001d031063 | ATCCATGACATCTGTTGTTCACAG | CGACTGCCTGCCCTGAT |
ZmNF-YA3 | Zm00001d031092 | ATGATGAGCTTCAGGAGCA | GAATCAAGACCACCCAAGCT |
ZmNF-YA4 | Zm00001d033215 | GCTGCTGGATTCTTTGGTGT | CAGAGAATCCATACCGAGAC |
ZmNF-YA5 | Zm00001d029489 | ATGCTTCTGCGAGAAAT | TGGAGATTGAGTGATGCGAT |
ZmNF-YA6 | Zm00001d033602 | ATCCATGAGCAGCATGGAGTCGC | AGCCTCGTTCTGTCGTAG |
ZmNF-YA7 | Zm00001d006835 | ATCCATGCCTGTGATTTTACGGG | TGGTGGAAACACGCTGCT |
ZmNF-YA8 | Zm00001d007882 | ATCCATGGATCCTCCCGCGTCCT | CAGAAAAAACAGAGGGGT |
ZmNF-YA9 | Zm00001d041491 | ATCCATGCAGGTCACCAGCGAT | TTCACGACTAGGCGCCTG |
ZmNF-YA10 | Zm00001d013676 | ATGATGAGCTTCAAGGGAC | CGCCCTGAGGAGCTCGCAG |
ZmNF-YA11 | Zm00001d033773 | ATGATGAGCTTCAAGGGAC | CGCCCTGAGGAGCTCGC |
ZmNF-YA12 | Zm00001d018255 | ATCCATGTACGCGTCCCTGGATT | TCTCATAACTGGAACCCT |
ZmNF-YA13 | Zm00001d022109 | ATGTGCCTTTTACGGGAAAG | TGGTGGAAACACGCTGCTG |
ZmNF-YA14 | Zm00001d026305 | ATGCCTGTGATTTTACGGGT | AAGCCAATGGATGGTAAAG |
ZmNF-YA15 | Zm00001d013501 | ATGTTGTCGCGGCCGGG | TCAAGCCTCGTTGTGTCG |
ZmNF-YA16 | Zm00001d013856 | ATGAACGGAGCGCATGAGT | TTAAAGCCAATGGATGGT |
Table 1 Primers sequences for 16 NF-YA family members
基因名称 | 基因ID | 正向引物序列 | 反向引物序列 |
---|---|---|---|
Gene name | Gene ID | Forward primer sequence(5'-3') | Reverse primer sequence(5'-3') |
ZmNF-YA1 | Zm00001d027874 | ATCCATGCTCCCTCCTCATCTCAC | CCCGGCTCACCGCCCCCTCTCG |
ZmNF-YA2 | Zm00001d031063 | ATCCATGACATCTGTTGTTCACAG | CGACTGCCTGCCCTGAT |
ZmNF-YA3 | Zm00001d031092 | ATGATGAGCTTCAGGAGCA | GAATCAAGACCACCCAAGCT |
ZmNF-YA4 | Zm00001d033215 | GCTGCTGGATTCTTTGGTGT | CAGAGAATCCATACCGAGAC |
ZmNF-YA5 | Zm00001d029489 | ATGCTTCTGCGAGAAAT | TGGAGATTGAGTGATGCGAT |
ZmNF-YA6 | Zm00001d033602 | ATCCATGAGCAGCATGGAGTCGC | AGCCTCGTTCTGTCGTAG |
ZmNF-YA7 | Zm00001d006835 | ATCCATGCCTGTGATTTTACGGG | TGGTGGAAACACGCTGCT |
ZmNF-YA8 | Zm00001d007882 | ATCCATGGATCCTCCCGCGTCCT | CAGAAAAAACAGAGGGGT |
ZmNF-YA9 | Zm00001d041491 | ATCCATGCAGGTCACCAGCGAT | TTCACGACTAGGCGCCTG |
ZmNF-YA10 | Zm00001d013676 | ATGATGAGCTTCAAGGGAC | CGCCCTGAGGAGCTCGCAG |
ZmNF-YA11 | Zm00001d033773 | ATGATGAGCTTCAAGGGAC | CGCCCTGAGGAGCTCGC |
ZmNF-YA12 | Zm00001d018255 | ATCCATGTACGCGTCCCTGGATT | TCTCATAACTGGAACCCT |
ZmNF-YA13 | Zm00001d022109 | ATGTGCCTTTTACGGGAAAG | TGGTGGAAACACGCTGCTG |
ZmNF-YA14 | Zm00001d026305 | ATGCCTGTGATTTTACGGGT | AAGCCAATGGATGGTAAAG |
ZmNF-YA15 | Zm00001d013501 | ATGTTGTCGCGGCCGGG | TCAAGCCTCGTTGTGTCG |
ZmNF-YA16 | Zm00001d013856 | ATGAACGGAGCGCATGAGT | TTAAAGCCAATGGATGGT |
基因名称 Gene name | 基因号 Gene ID | 正向引物序列 Forward primer sequence(5'-3') | 反向引物序列 Reverse primer sequence(5'-3') |
---|---|---|---|
NF-YA1 | Zm00001d027874 | GGCATGGTTCCGTCCTCTCG | TCCGCCTCTAGCTTTGCACG |
NF-YA2 | Zm00001d031063 | ATGCATCCGGCTGGCTTACC | CAGCTCCCCTGGCCCTTTTC |
NF-YA3 | Zm00001d031092 | AGCCTGTCGGGTTCAGAGGT | TCAGGAGGTCGCAGCAGACT |
NF-YA4 | Zm00001d033215 | GCTCGCCAAAGGCAGAAAGC | GACACGTCGGAGCCAGACAG |
NF-YA5 | Zm00001d029489 | ACCATTGCCAGTTGGGCCTG | CTGGTCCACGGACTCGCTTC |
NF-YA6 | Zm00001d033602 | GAACGAACCTGGTGGAGCCC | CTCGCTGCTCTCGTCACTCG |
NF-YA7 | Zm00001d006835 | GTGCGGTTGGGGTCTTGACA | AGCACGTGTTTGCCTCCTCC |
NF-YA9 | Zm00001d041491 | CGGCGGCTTATGGTGGACAT | GGCCCTTGACAAGCTTCCGT |
NF-YA10 | Zm00001d013676 | TCAGCGACGGCAGCAACCC | GCGGCAGCGGGGTGAAGAA |
NF-YA12 | Zm00001d018255 | TGCCACTGTGTTCCGTTCCC | CGGAACCTCGTGCCCTCTTC |
NF-YA13 | Zm00001d022109 | CAGCAGTACCAGGCGTCGAG | ACTGAAGTTGGCTGTGGGGC |
NF-YA14 | Zm00001d026305 | GCACGTGTTTGCCTCCTCCT | TGCCATTGTCCATCCCCAGC |
NF-YA15 | Zm00001d013501 | GGGCGGGACGACGAACCTG | CCGCGGTACTGCTTGGCGT |
Table 2 Primer sequences for the 13 NF-YA family members for real-time quantitative PCR
基因名称 Gene name | 基因号 Gene ID | 正向引物序列 Forward primer sequence(5'-3') | 反向引物序列 Reverse primer sequence(5'-3') |
---|---|---|---|
NF-YA1 | Zm00001d027874 | GGCATGGTTCCGTCCTCTCG | TCCGCCTCTAGCTTTGCACG |
NF-YA2 | Zm00001d031063 | ATGCATCCGGCTGGCTTACC | CAGCTCCCCTGGCCCTTTTC |
NF-YA3 | Zm00001d031092 | AGCCTGTCGGGTTCAGAGGT | TCAGGAGGTCGCAGCAGACT |
NF-YA4 | Zm00001d033215 | GCTCGCCAAAGGCAGAAAGC | GACACGTCGGAGCCAGACAG |
NF-YA5 | Zm00001d029489 | ACCATTGCCAGTTGGGCCTG | CTGGTCCACGGACTCGCTTC |
NF-YA6 | Zm00001d033602 | GAACGAACCTGGTGGAGCCC | CTCGCTGCTCTCGTCACTCG |
NF-YA7 | Zm00001d006835 | GTGCGGTTGGGGTCTTGACA | AGCACGTGTTTGCCTCCTCC |
NF-YA9 | Zm00001d041491 | CGGCGGCTTATGGTGGACAT | GGCCCTTGACAAGCTTCCGT |
NF-YA10 | Zm00001d013676 | TCAGCGACGGCAGCAACCC | GCGGCAGCGGGGTGAAGAA |
NF-YA12 | Zm00001d018255 | TGCCACTGTGTTCCGTTCCC | CGGAACCTCGTGCCCTCTTC |
NF-YA13 | Zm00001d022109 | CAGCAGTACCAGGCGTCGAG | ACTGAAGTTGGCTGTGGGGC |
NF-YA14 | Zm00001d026305 | GCACGTGTTTGCCTCCTCCT | TGCCATTGTCCATCCCCAGC |
NF-YA15 | Zm00001d013501 | GGGCGGGACGACGAACCTG | CCGCGGTACTGCTTGGCGT |
基因名称 | 染色体 | 起始位点 | 终止位点 | 编码区 | 氨基酸数量 | 分子量 | 等电点 |
---|---|---|---|---|---|---|---|
Gene name | Chr | Start/bp | End/bp | CDS/bp | Amino acid number | Molecular mass/u | pI |
NF-YA1 | 1 | 15805373 | 15808637 | 750 | 214 | 27 207.16 | 8.96 |
NF-YA2 | 1 | 175263789 | 175269072 | 2 229 | 742 | 85 041.59 | 9.42 |
NF-YA3 | 1 | 174875434 | 174876987 | 993 | 330 | 35 231.81 | 8.93 |
NF-YA4 | 1 | 250376435 | 250383733 | 897 | 322 | 34 122.58 | 9.61 |
NF-YA5 | 1 | 71587764 | 71597309 | 273 | 90 | 10 062.62 | 11.87 |
NF-YA6 | 1 | 263505895 | 263513358 | 795 | 264 | 26 775.89 | 9.52 |
NF-YA7 | 2 | 211453451 | 211457855 | 898 | 300 | 32 759.35 | 9.02 |
NF-YA8 | 2 | 235102149 | 235107745 | 881 | 294 | 31 336.04 | 9.78 |
NF-YA9 | 3 | 123429802 | 123439843 | 1 020 | 215 | 31 009.56 | 9.39 |
NF-YA10 | 5 | 16478975 | 16486358 | 1 040 | 341 | 35 736.46 | 9.40 |
NF-YA11 | 1 | 268502777 | 268507502 | 570 | 262 | 29 076.26 | 9.80 |
NF-YA12 | 5 | 211713589 | 211721532 | 882 | 265 | 31 907.09 | 10.31 |
NF-YA13 | 7 | 165029459 | 165036770 | 901 | 301 | 29 607.50 | 6.63 |
NF-YA14 | 10 | 141890017 | 141899048 | 876 | 291 | 48 253.63 | 6.16 |
NF-YA15 | 5 | 12556164 | 12560070 | 562 | 111 | 14 415.92 | 10.90 |
NF-YA16 | 5 | 23241181 | 23243549 | 397 | 156 | 16 876.48 | 9.64 |
Table 3 Genetic information of maize NF-YA family members
基因名称 | 染色体 | 起始位点 | 终止位点 | 编码区 | 氨基酸数量 | 分子量 | 等电点 |
---|---|---|---|---|---|---|---|
Gene name | Chr | Start/bp | End/bp | CDS/bp | Amino acid number | Molecular mass/u | pI |
NF-YA1 | 1 | 15805373 | 15808637 | 750 | 214 | 27 207.16 | 8.96 |
NF-YA2 | 1 | 175263789 | 175269072 | 2 229 | 742 | 85 041.59 | 9.42 |
NF-YA3 | 1 | 174875434 | 174876987 | 993 | 330 | 35 231.81 | 8.93 |
NF-YA4 | 1 | 250376435 | 250383733 | 897 | 322 | 34 122.58 | 9.61 |
NF-YA5 | 1 | 71587764 | 71597309 | 273 | 90 | 10 062.62 | 11.87 |
NF-YA6 | 1 | 263505895 | 263513358 | 795 | 264 | 26 775.89 | 9.52 |
NF-YA7 | 2 | 211453451 | 211457855 | 898 | 300 | 32 759.35 | 9.02 |
NF-YA8 | 2 | 235102149 | 235107745 | 881 | 294 | 31 336.04 | 9.78 |
NF-YA9 | 3 | 123429802 | 123439843 | 1 020 | 215 | 31 009.56 | 9.39 |
NF-YA10 | 5 | 16478975 | 16486358 | 1 040 | 341 | 35 736.46 | 9.40 |
NF-YA11 | 1 | 268502777 | 268507502 | 570 | 262 | 29 076.26 | 9.80 |
NF-YA12 | 5 | 211713589 | 211721532 | 882 | 265 | 31 907.09 | 10.31 |
NF-YA13 | 7 | 165029459 | 165036770 | 901 | 301 | 29 607.50 | 6.63 |
NF-YA14 | 10 | 141890017 | 141899048 | 876 | 291 | 48 253.63 | 6.16 |
NF-YA15 | 5 | 12556164 | 12560070 | 562 | 111 | 14 415.92 | 10.90 |
NF-YA16 | 5 | 23241181 | 23243549 | 397 | 156 | 16 876.48 | 9.64 |
Fig.4 Alignment of ZmNF-YA5 and ZmNF-YA6 sequences a and d, ZmNF-YA5 and ZmNF-YAYA6 sequences in MaizeGDB; b and c, Cloned sequence of ZmNF-YA5; e and f, Cloned sequences of ZmNF-YA6.
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