Acta Agriculturae Zhejiangensis ›› 2025, Vol. 37 ›› Issue (8): 1605-1614.DOI: 10.3969/j.issn.1004-1524.20241020

• Crop Science • Previous Articles     Next Articles

Bioinformatics analysis and cloning of NF-YA family genes in maize(Zea mays)

GUAN Xiusheng1(), LIU Tieshan2, WANG Juan2, ZHANG Maolin2, LIU Chunxiao2, DONG Rui2, GUAN Haiying2, LIU Qiang2, XU Yang1, HE Chunmei2,*()   

  1. 1. Agricultural College, Yangzhou University, Yangzhou 225009, Jiangsu, China
    2. National Engineering Laboratory of Wheat and Maize, Key Laboratory of Biology and Genetic Improvement of Maize in Northern Yellow-Huai River Plain, Ministry of Agriculture and Rural Affairs, Shandong Academy of Agricultural Sciences, Jinan 250100, China
  • Received:2024-11-25 Online:2025-08-25 Published:2025-09-03
  • Contact: HE Chunmei

Abstract:

The nuclear factor (NF-Y), composed of NF-YA, NF-YB, and NF-YC subunits, specifically recognizes the CCAAT-box in the promoters of target genes and is a critically important transcription factor. To explore the functions of the NF-YA family members in maize (Zea mays), 16 maize NF-YA family members were identified by bioinformatics methods using the maize gene database, and 13 of these members were cloned, and their tissue-specific expression patterns as well as expression profiles under salt stress were determined. The results showed that except for ZmNF-YA16, the other maize NF-YA family members contain a highly conserved CBFB_NF-YA domain. Maize NF-YA family members were classified into three types according to phylogenetic analysis. Subcellular localization prediction indicated that except for ZmNF-YA14, which was localized to both the nucleus and mitochondrion, the other maize NF-YA family members were localized in the nucleus. Promoter cis-element analysis revealed that the genes of maize NF-YA family members contained various cis-acting elements. Tissue expression analysis showed that five NF-YA family members exhibited tissue specificity, while ZmNF-YA2 and ZmNF-YA4 were expressed in all tissues examined. Under salt stress, ZmNF-YA5 and ZmNF-YA10 showed positive responses, while ZmNF-YA13 negatively regulated the maize response to salt stress. This study provided a preliminary analysis of the gene structures and salt stress response patterns of maize NF-YA family members, laying a foundation for further research into the functions of this family.

Key words: maize, nuclear factor Y(NF-Y), NF-YA subunit, salt stress

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