Acta Agriculturae Zhejiangensis ›› 2022, Vol. 34 ›› Issue (12): 2622-2628.DOI: 10.3969/j.issn.1004-1524.2022.12.05
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Global genotype and subgenotype prevalence of bovine viral diarrhea virus
CHEN Jie1(
), ZUO Zhicai1, CAI Dongjie1,*(), FU Xingxin1, LIU Lingli1, ZHANG Yilin1,2, GOU Liping1, WANG Ya1, REN Zhihua1, DENG Junliang1
- 1. Sichuan Provincial Key Laboratory of Animal Diseases and Human Health, College of Veterinary Medicine, Sichuan Agricultural University, Chengdu 611134, China
2. Animal Disease Prevention and Control Center of Agricultural and Rural Bureau of Luoping County, Qujing 655800, Yunnan, China
-
Received:2022-03-14Online:2022-12-25Published:2022-12-26 -
Contact:CAI Dongjie
CLC Number:
Cite this article
CHEN Jie, ZUO Zhicai, CAI Dongjie, FU Xingxin, LIU Lingli, ZHANG Yilin, GOU Liping, WANG Ya, REN Zhihua, DENG Junliang. Global genotype and subgenotype prevalence of bovine viral diarrhea virus[J]. Acta Agriculturae Zhejiangensis, 2022, 34(12): 2622-2628.
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Fig.1 Schematic representation of the genomic structure of BVDV
Fig.1 Schematic representation of the genomic structure of BVDV
Table 1 Subgenotype distribution of BVDV in America, Australia, Africa and Europe
| 国家 Country | 基因区域 Genomic region | 分离年份 Year of isolation | BVDV-1 | BVDV-2 | BVDV-3 | 文献 Reference | ||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a | b | c | d | e | f | g | h | i | j | k | l | m | n | o | p | q | r | s | t | u | v | ? | a | b | c | d | ? | |||||
| 阿根廷Argentina | 5'UTR, Npro, E2 | 1984—2020 | 50 | 125 | — | — | 1 | — | — | — | 1 | 4 | — | — | — | — | — | — | — | — | — | — | — | — | 2 | 6 | 13 | 1 | 1 | — | 4 | [ |
| 巴西Brazil | 5'UTR, Npro, E2 | 1993—2021 | 60 | 29 | — | 30 | 1 | — | — | — | 1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 46 | 2 | — | 3 | 9 | [ |
| 加拿大Canada | 5'UTR | 1990—2007 | 1 | 2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3 | — | — | — | — | — | [ |
| 埃及Egypt | 5'UTR, Npro | 1994—2015 | — | 7 | — | — | — | — | — | — | — | 1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | [ |
| 南非South Africa | 5'UTR | 1990—2016 | 35 | 18 | 20 | 20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20 | — | — | — | — | — | — | [ |
| 美国USA | 5'UTR, Npro, E2 | 1980—2020 | 205 | 675 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3 | 121 | — | — | — | 9 | 3 | [ |
| 澳大利亚Australia | 5'UTR, Npro | 1985—2020 | 13 | 1 | 445 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4 | — | — | — | — | 3 | [ |
| 乌拉圭Uruguay | 5'UTR, Npro | 2014—2018 | 49 | — | — | — | — | — | — | — | 2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10 | — | — | — | — | [ |
| 奥地利Austria | 5'UTR, Npro | 1997—2014 | 4 | 134 | — | 34 | 16 | 218 | 11 | 222 | — | — | 4 | — | — | — | — | — | — | — | — | — | — | — | — | 1 | 1 | — | — | — | 3 | [ |
| 法国France | 5'UTR, Npro | 1993—2005 | 3 | 15 | — | 3 | 46 | — | — | — | — | — | — | 3* | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | [ |
| 德国Germany | 5'UTR, E2 | 1960—2014 | 1 | 31 | — | 24 | 24 | 65 | 3 | 17 | — | — | 1 | — | — | — | — | — | — | — | — | — | — | — | — | — | 11 | — | 16 | — | — | [ |
| 爱尔兰Ireland | 5'UTR, Npro | 1968—2014 | 428 | 19 | — | 1 | 1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12 | — | 1 | [ |
| 意大利Italy | 5'UTR | 1966—2017 | 16 | 193 | 2 | 27 | 141 | 55 | 8 | 20 | — | — | 3 | 1* | — | — | — | — | — | 2* | 1 | 1 | 2 | — | — | 8 | 10 | — | — | — | — | [ |
| 西班牙Spain | 5'UTR, Npro | 1989—2018 | 3 | 162 | 2 | 9 | 8 | 2 | — | 2 | — | — | 1 | 1 | — | — | — | — | — | — | — | — | — | — | — | — | 2 | 9 | — | — | 17 | [ |
| 土耳其Turkey | 5'UTR, Npro, E2 | 1997—2021 | 10 | 12 | 1 | 9 | — | 21 | — | 1 | 1 | — | — | 54* | — | — | — | — | — | 3* | — | — | — | — | 20 | 7 | 7 | 1 | — | — | — | [ |
| 英国UK | 5'UTR, Npro | 1966—2012 | 390 | 65 | — | 2 | 5 | 1 | — | — | 23 | 1 | — | — | — | — | — | — | — | — | — | — | — | — | — | 3 | 7 | — | — | — | 1 | [ |
| 波兰Poland | 5'UTR, Npro | 2004—2019 | — | 48 | — | 30 | 1 | 23 | 19 | — | — | — | — | — | — | — | — | — | — | 4 | 3 | — | — | — | — | — | 4 | — | — | — | — | [ |
| 斯洛文尼亚Slovenia | 5'UTR, Npro | 1997—2006 | 1 | 5 | — | 24 | 1 | 28 | 1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | [ |
| 芬兰Finland | 5'UTR, Npro | 1993—2004 | — | — | — | 5 | — | 1 | — | — | — | 2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | [ |
Table 1 Subgenotype distribution of BVDV in America, Australia, Africa and Europe
| 国家 Country | 基因区域 Genomic region | 分离年份 Year of isolation | BVDV-1 | BVDV-2 | BVDV-3 | 文献 Reference | ||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a | b | c | d | e | f | g | h | i | j | k | l | m | n | o | p | q | r | s | t | u | v | ? | a | b | c | d | ? | |||||
| 阿根廷Argentina | 5'UTR, Npro, E2 | 1984—2020 | 50 | 125 | — | — | 1 | — | — | — | 1 | 4 | — | — | — | — | — | — | — | — | — | — | — | — | 2 | 6 | 13 | 1 | 1 | — | 4 | [ |
| 巴西Brazil | 5'UTR, Npro, E2 | 1993—2021 | 60 | 29 | — | 30 | 1 | — | — | — | 1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 46 | 2 | — | 3 | 9 | [ |
| 加拿大Canada | 5'UTR | 1990—2007 | 1 | 2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3 | — | — | — | — | — | [ |
| 埃及Egypt | 5'UTR, Npro | 1994—2015 | — | 7 | — | — | — | — | — | — | — | 1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | [ |
| 南非South Africa | 5'UTR | 1990—2016 | 35 | 18 | 20 | 20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20 | — | — | — | — | — | — | [ |
| 美国USA | 5'UTR, Npro, E2 | 1980—2020 | 205 | 675 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3 | 121 | — | — | — | 9 | 3 | [ |
| 澳大利亚Australia | 5'UTR, Npro | 1985—2020 | 13 | 1 | 445 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4 | — | — | — | — | 3 | [ |
| 乌拉圭Uruguay | 5'UTR, Npro | 2014—2018 | 49 | — | — | — | — | — | — | — | 2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10 | — | — | — | — | [ |
| 奥地利Austria | 5'UTR, Npro | 1997—2014 | 4 | 134 | — | 34 | 16 | 218 | 11 | 222 | — | — | 4 | — | — | — | — | — | — | — | — | — | — | — | — | 1 | 1 | — | — | — | 3 | [ |
| 法国France | 5'UTR, Npro | 1993—2005 | 3 | 15 | — | 3 | 46 | — | — | — | — | — | — | 3* | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | [ |
| 德国Germany | 5'UTR, E2 | 1960—2014 | 1 | 31 | — | 24 | 24 | 65 | 3 | 17 | — | — | 1 | — | — | — | — | — | — | — | — | — | — | — | — | — | 11 | — | 16 | — | — | [ |
| 爱尔兰Ireland | 5'UTR, Npro | 1968—2014 | 428 | 19 | — | 1 | 1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12 | — | 1 | [ |
| 意大利Italy | 5'UTR | 1966—2017 | 16 | 193 | 2 | 27 | 141 | 55 | 8 | 20 | — | — | 3 | 1* | — | — | — | — | — | 2* | 1 | 1 | 2 | — | — | 8 | 10 | — | — | — | — | [ |
| 西班牙Spain | 5'UTR, Npro | 1989—2018 | 3 | 162 | 2 | 9 | 8 | 2 | — | 2 | — | — | 1 | 1 | — | — | — | — | — | — | — | — | — | — | — | — | 2 | 9 | — | — | 17 | [ |
| 土耳其Turkey | 5'UTR, Npro, E2 | 1997—2021 | 10 | 12 | 1 | 9 | — | 21 | — | 1 | 1 | — | — | 54* | — | — | — | — | — | 3* | — | — | — | — | 20 | 7 | 7 | 1 | — | — | — | [ |
| 英国UK | 5'UTR, Npro | 1966—2012 | 390 | 65 | — | 2 | 5 | 1 | — | — | 23 | 1 | — | — | — | — | — | — | — | — | — | — | — | — | — | 3 | 7 | — | — | — | 1 | [ |
| 波兰Poland | 5'UTR, Npro | 2004—2019 | — | 48 | — | 30 | 1 | 23 | 19 | — | — | — | — | — | — | — | — | — | — | 4 | 3 | — | — | — | — | — | 4 | — | — | — | — | [ |
| 斯洛文尼亚Slovenia | 5'UTR, Npro | 1997—2006 | 1 | 5 | — | 24 | 1 | 28 | 1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | [ |
| 芬兰Finland | 5'UTR, Npro | 1993—2004 | — | — | — | 5 | — | 1 | — | — | — | 2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | [ |
Table 2 Subgenotype distribution of BVDV in Asia
| 国家 Country | 基因区域 Genomic region | 分离年份 Year of isolation | BVDV-1 | BVDV-2 | BVDV-3 | 文献 Reference | ||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a | b | c | d | e | f | g | h | i | j | k | l | m | n | o | p | q | r | s | t | u | v | ? | a | b | c | d | ? | |||||
| 中国China | 5'UTR, Npro, E2 | 1988—2021 | 63 | 124 | 57 | 48 | — | 3 | — | — | 3 | — | — | — | 104 | — | 18 | — | 21 | — | — | — | 24 | 12 | 2 | — | 2 | 1 | — | — | 2 | [ |
| 印度India | 5'UTR, Npro | 2000—2018 | — | 24 | 6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8 | 6 | 1 | — | — | 19 | [ |
| 菲律宾Philippines | E2 | 未知Unknow | — | 3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | [ |
| 日本Japan | 5'UTR, Npro | 1975—2020 | 358 | 1517 | 340 | — | — | — | — | — | — | — | 4 | — | 1 | 2 | 2 | — | — | — | — | — | — | — | — | 2 | 789 | 2 | — | 5 | — | [ |
| 韩国Korea | 5'UTR | 1999—2018 | 21 | 62 | 3 | — | — | — | — | — | — | — | — | — | — | 1 | 1 | — | — | — | — | — | — | — | — | — | 29 | — | — | — | — | [ |
| 蒙古国Mongolia | 5'UTR | 2013—2014 | 4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5 | 4 | — | — | — | — | [ |
Table 2 Subgenotype distribution of BVDV in Asia
| 国家 Country | 基因区域 Genomic region | 分离年份 Year of isolation | BVDV-1 | BVDV-2 | BVDV-3 | 文献 Reference | ||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a | b | c | d | e | f | g | h | i | j | k | l | m | n | o | p | q | r | s | t | u | v | ? | a | b | c | d | ? | |||||
| 中国China | 5'UTR, Npro, E2 | 1988—2021 | 63 | 124 | 57 | 48 | — | 3 | — | — | 3 | — | — | — | 104 | — | 18 | — | 21 | — | — | — | 24 | 12 | 2 | — | 2 | 1 | — | — | 2 | [ |
| 印度India | 5'UTR, Npro | 2000—2018 | — | 24 | 6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8 | 6 | 1 | — | — | 19 | [ |
| 菲律宾Philippines | E2 | 未知Unknow | — | 3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | [ |
| 日本Japan | 5'UTR, Npro | 1975—2020 | 358 | 1517 | 340 | — | — | — | — | — | — | — | 4 | — | 1 | 2 | 2 | — | — | — | — | — | — | — | — | 2 | 789 | 2 | — | 5 | — | [ |
| 韩国Korea | 5'UTR | 1999—2018 | 21 | 62 | 3 | — | — | — | — | — | — | — | — | — | — | 1 | 1 | — | — | — | — | — | — | — | — | — | 29 | — | — | — | — | [ |
| 蒙古国Mongolia | 5'UTR | 2013—2014 | 4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5 | 4 | — | — | — | — | [ |
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