Acta Agriculturae Zhejiangensis ›› 2023, Vol. 35 ›› Issue (9): 2090-2096.DOI: 10.3969/j.issn.1004-1524.20221285
• Horticultural Science • Previous Articles Next Articles
LI Biyuan(
), YUE Zhichen, ZHAO Yanting, LEI Juanli, HU Qizan, TAO Peng(
)
Received:2022-09-01
Online:2023-09-25
Published:2023-10-09
Contact:
TAO Peng
CLC Number:
LI Biyuan, YUE Zhichen, ZHAO Yanting, LEI Juanli, HU Qizan, TAO Peng. Identification and functional analysis of the BrLCYB gene of lycopene β-cyclase from Chinese cabbage[J]. Acta Agriculturae Zhejiangensis, 2023, 35(9): 2090-2096.
Add to citation manager EndNote|Ris|BibTeX
URL: http://www.zjnyxb.cn/EN/10.3969/j.issn.1004-1524.20221285
| 引物/检索序列名称Name | 序列Sequence (5 '→3') |
|---|---|
| LCYBF | TTTTGTTTAACTTTAAGAAGGAGATATACCATGGATACTCTCTT |
| LCYBR | TCGGGCTTTGTTAGCAGCCGGATCTCAGTGTTAGTCTCTATCT |
| BrLCYB-1S | CTTCTGGGTGATCTTCAATTATCTGAAAGTTAAGA |
| BrLCYB-2S | CATGTAGGTGATCTTCAATTATCTGAAAGTTAAGA |
Table 1 The retrieval sequences used in this study
| 引物/检索序列名称Name | 序列Sequence (5 '→3') |
|---|---|
| LCYBF | TTTTGTTTAACTTTAAGAAGGAGATATACCATGGATACTCTCTT |
| LCYBR | TCGGGCTTTGTTAGCAGCCGGATCTCAGTGTTAGTCTCTATCT |
| BrLCYB-1S | CTTCTGGGTGATCTTCAATTATCTGAAAGTTAAGA |
| BrLCYB-2S | CATGTAGGTGATCTTCAATTATCTGAAAGTTAAGA |
| At | Br | Bni | Bo | Bna_A | Bna_C | Bju_A | Bju_B | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| LF | MF1 | MF2 | LF | MF1 | MF2 | LF | MF1 | MF2 | LF | MF1 | MF2 | LF | MF1 | MF2 | LF | MF1 | MF2 | LF | MF1 | MF2 | |
| • | • | • | • | • | • | • | • | ||||||||||||||
Table 2 Subgenomic localization and syntenic relationship of LCYB genes in Brassica species
| At | Br | Bni | Bo | Bna_A | Bna_C | Bju_A | Bju_B | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| LF | MF1 | MF2 | LF | MF1 | MF2 | LF | MF1 | MF2 | LF | MF1 | MF2 | LF | MF1 | MF2 | LF | MF1 | MF2 | LF | MF1 | MF2 | |
| • | • | • | • | • | • | • | • | ||||||||||||||
Fig.1 Amplification of the BrLCYB gene with the template DNA and cDNA of Chinese cabbage (A), gene structure and transcript type of BrLCYB in Chinese cabbage He2 line (B) and the proportion of BrLCYB-1 and BrLCYB-2 in the total BrLCYB transcripts (C)
Fig.3 The LCYB phylogenetic tree The number of the box representing the number of introns in the coding sequence of LCYB gene of the corresponding specie.
| [1] | SUN T H, YUAN H, CAO H B, et al. Carotenoid metabolism in plants: the role of plastids[J]. Molecular Plant, 2018, 11(1): 58-74. |
| [2] | NISAR N, LI L, LU S, et al. Carotenoid metabolism in plants[J]. Molecular Plant, 2015, 8(1): 68-82. |
| [3] | 李永平, 陈敏氡, 朱海生, 等. 黄秋葵番茄红素β-环化酶LCYB基因的克隆与分析[J]. 植物遗传资源学报, 2018, 19(1): 167-176. |
| LI Y P, CHEN M D, ZHU H S, et al. Cloning and expression analysis of a lycopene beta-cyclase gene in Hibiscus esculentus L[J]. Journal of Plant Genetic Resources, 2018, 19(1): 167-176. (in Chinese with English abstract) | |
| [4] | YANG S J, TIAN X X, WANG Z Y, et al. Fine mapping and candidate gene identification of a white flower gene BrWF3 in Chinese cabbage (Brassica rapa L. ssp. pekinensis)[J]. Frontiers in Plant Science, 2021, 12: 646222. |
| [5] | SU T B, YU S C, ZHANG J W F, et al. Loss of function of the carotenoid isomerase gene BrCRTISO confers orange color to the inner leaves of Chinese cabbage (Brassica rapa L. ssp. pekinensis)[J]. Plant Molecular Biology Reporter, 2015, 33(3): 648-659. |
| [6] | TONG C B, WANG X W, YU J Y, et al. Comprehensive analysis of RNA-seq data reveals the complexity of the transcriptome in Brassica rapa[J]. BMC Genomics, 2013, 14: 689. |
| [7] | ZHANG Y, PENG L F, WU Y, et al. Analysis of global gene expression profiles to identify differentially expressed genes critical for embryo development in Brassica rapa[J]. Plant Molecular Biology, 2014, 86(4/5): 425-442. |
| [8] | HASHIMOTO H, URAGAMI C, COGDELL R J. Carotenoids and photosynthesis[J]. Sub-Cellular Biochemistry, 2016, 79: 111-139. |
| [9] | SANDMANN G. Diversity and origin of carotenoid biosynthesis: its history of coevolution towards plant photosynthesis[J]. New Phytologist, 2021, 232(2): 479-493. |
| [10] | LEPPEK K, DAS R, BARNA M. Functional 5' UTR mRNA structures in eukaryotic translation regulation and how to find them[J]. Nature Reviews Molecular Cell Biology, 2018, 19(3): 158-174. |
| [11] | 孙亮. 棉花FAD2-1基因的5'UTR内含子与启动子的顺式作用元件的鉴定及其转录调控作用的研究[D]. 石河子: 石河子大学, 2018. |
| SUN L. Identification and transcriptional regulation of Cis acting elements of the 5'UTR intron and promoter of cotton FAD2-1 gene[D]. Shihezi: Shihezi University, 2018. (in Chinese with English abstract) | |
| [12] | 金谷雷. 植物内含子进化模式研究[D]. 福州: 福建农林大学, 2007. |
| JIN G L. Research of plant intron evolution pattern[D]. Fuzhou: Fujian Agriculture and Forestry University, 2007. (in Chinese with English abstract) | |
| [13] | MISAWA N, NAKAGAWA M, KOBAYASHI K, et al. Elucidation of the Erwinia uredovora carotenoid biosynthetic pathway by functional analysis of gene products expressed in Escherichia coli[J]. Journal of Bacteriology, 1990, 172(12): 6704-6712. |
| [14] | 张建成, 陶能国, 周文静, 等. 红肉脐橙番茄红素β-环化酶基因的克隆及其在大肠杆菌中的功能表达[J]. 园艺学报, 2008, 35(9): 1269-1276. |
| ZHANG J C, TAO N G, ZHOU W J, et al. Lycopene β-cyclase gene cloning from Citrus sinensis osbeck ‘cara cara’ and its functional expression in E.coli[J]. Acta Horticulturae Sinica, 2008, 35(9): 1269-1276. (in Chinese with English abstract) | |
| [15] | 张建成, 高利敏, 王鹏飞, 等. 欧李番茄红素β-环化酶基因ChLCYb的分离与功能鉴定[J]. 园艺学报, 2017, 44(11): 2075-2088. |
| ZHANG J C, GAO L M, WANG P F, et al. Molecular cloning and functional characterization of a lycopene β-cyclase gene ChLCYb in Cerasus humilis[J]. Acta Horticulturae Sinica, 2017, 44(11): 2075-2088. (in Chinese with English abstract) |
| [1] | ZHANG Jun, ZHANG Bo, HU Bibo, LIU Jingliang, ZHANG Xiaoyu, LI Chunyang, XIONG Shengting, GUO Binbin, WANG Xiucun, MA Chao. Identification and expression analysis of members of the SWEET and SUT families in wheat (Triticum aestivum L.) [J]. Acta Agriculturae Zhejiangensis, 2025, 37(9): 1825-1839. |
| [2] | PEI Huimin, WU Mingming, ZHAI Rongrong, YE Jing, JIN Yue, ZHU Yi, HOU Jianjun, ZHU Guofu, YE Shenghai. Research progress on gene function and breeding of low-cadmium rice cultivars [J]. Acta Agriculturae Zhejiangensis, 2025, 37(9): 2012-2020. |
| [3] | CONG Jianmin, HUANG Weijian, YIN Xinxing, LIU Jinping, ZHAO Yong. Effect of 5-azacytosine on somatic embryo-induced DNA methylation in Fraxinus mandschurica [J]. Acta Agriculturae Zhejiangensis, 2025, 37(8): 1648-1657. |
| [4] | WANG Xiaohui, JIA Sainan, FENG Jiayu, YIN Xinyue, LIU Zixuan, LIU Wenjie, ZHAO Shuaiying, WANG Shujing, TANG Yuehui. Cloning and function analysis of JcMBY27 gene from Jatropha curcas [J]. Acta Agriculturae Zhejiangensis, 2025, 37(8): 1658-1665. |
| [5] | LI Yujing, HUANG Qianru, ZHANG Aidong, WU Xuexia, ZHU Dongxing, XIAO Kai. Function of the SmMYB13 gene in drought stress response in eggplant (Solanum melongena L.) [J]. Acta Agriculturae Zhejiangensis, 2025, 37(8): 1666-1679. |
| [6] | MIAO Bailing, CHEN Juanjuan, LI Liangjie, CHU Zongli, DONG Xiangxiang. The function of CchABCG5 gene in Camellia chekiangoleosa Hu [J]. Acta Agriculturae Zhejiangensis, 2025, 37(7): 1407-1416. |
| [7] | REN Jindong, CHEN Honglin, NIU Baolong, XU Xiaojun, LOU Bao. Mining new housekeeping genes of Macrobrachium rosenbergii based on transcriptome analysis [J]. Acta Agriculturae Zhejiangensis, 2025, 37(7): 1424-1429. |
| [8] | QI Yingji, LIU Shuya, LAN Hanyun, WANG Xuemei, SUN Tiantian, LI Shuhan, LI Qiunan, HUANG Xiaoli, GENG Yi, CHEN Defang, OUYANG Ping. Isolation, identification and genome-wide analysis of Spring viremia of carp virus in Sichuan Province of China [J]. Acta Agriculturae Zhejiangensis, 2025, 37(7): 1430-1440. |
| [9] | HONG Xia, LU Jilai, QI Huijuan, CHEN Xiaoshang. Genetic diversity analysis and core collection construction of ginger (Zingiber officinale Rosc.) germplasm accessions [J]. Acta Agriculturae Zhejiangensis, 2025, 37(6): 1233-1243. |
| [10] | TAO Peng, DING Xiaoya, YUE Zhichen, ZHAO Yanting, LEI Juanli, HU Qizan, ZANG Yunxiang, LI Biyuan. Genome-wide association study and candidate gene prediction of pectin content of pumpkin (Cucurbita moschata) [J]. Acta Agriculturae Zhejiangensis, 2025, 37(6): 1244-1251. |
| [11] | WANG Yidi, WANG Jinglei, HU Tianhua, XU Yunmin, BAO Chonglai. Development of molecular markers for clubroot resistance and their application in Brassicaceae breeding [J]. Acta Agriculturae Zhejiangensis, 2025, 37(6): 1272-1284. |
| [12] | YI Ming, SUN Hong, SHEN Qi, TANG Jiangwu. Research progress on ectopic fermentation system in treatment of fecal residue and waste water of livestock and poultry [J]. Acta Agriculturae Zhejiangensis, 2025, 37(6): 1390-1396. |
| [13] | MA Jing'e, WU Siqi, WAN Shumin, XIONG Xinwei, XU Jiguo, XU Jing, RAO Yousheng, ZHOU Min. Proteomic study of large and small testes in Ningdu Yellow chicken based on tandem mass tags(TMT) technology [J]. Acta Agriculturae Zhejiangensis, 2025, 37(5): 1029-1044. |
| [14] | PEI Damei, ZHAO Hongping, WANG Long, LI Huaxin, ZHAO Zhi, XIAO Lu. Mixed genetic model analysis of major gene + polygene of branch angle in Brassica rapa L. [J]. Acta Agriculturae Zhejiangensis, 2025, 37(4): 745-753. |
| [15] | NI Zheng, LU Lei, ZHU Yinchu, CHEN Liu, LI Xinji, YE Weicheng, YUN Tao, HUA Jionggang, FU Yuan, ZHANG Cun. Epidemiological investigation and evaluation of purification strategies for avian leukosis in local chicken breeds in Zhejiang Province of China [J]. Acta Agriculturae Zhejiangensis, 2025, 37(4): 790-799. |
| Viewed | ||||||
|
Full text |
|
|||||
|
Abstract |
|
|||||